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Inconsistency resolution #1

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Dec 22, 2023
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Inconsistency resolution #1

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2,071 changes: 595 additions & 1,476 deletions hbao-base.json
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7,431 changes: 3,553 additions & 3,878 deletions hbao-base.obo
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2,625 changes: 601 additions & 2,024 deletions hbao-base.owl
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13,990 changes: 6,257 additions & 7,733 deletions hbao-full.json
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7,753 changes: 3,580 additions & 4,173 deletions hbao-full.obo
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22,902 changes: 11,888 additions & 11,014 deletions hbao-full.owl
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5,936 changes: 2,845 additions & 3,091 deletions hbao-simple-non-classified.json
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7,400 changes: 2,971 additions & 4,429 deletions hbao-simple-non-classified.obo
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7,486 changes: 3,965 additions & 3,521 deletions hbao-simple-non-classified.owl
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353 changes: 2 additions & 351 deletions hbao-simple.json
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Original file line number Diff line number Diff line change
Expand Up @@ -10,9 +10,9 @@
"val" : "Human Brain Atlas Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-08-24"
"val" : "2023-12-22"
} ],
"version" : "https://purl.brain-bican.org/ontology/hbao/releases/2023-08-24/hbao-simple.json"
"version" : "https://purl.brain-bican.org/ontology/hbao/releases/2023-12-22/hbao-simple.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/BFO_0000050",
Expand All @@ -30,203 +30,10 @@
"val" : "part_of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000066",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "BFO:0000066"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "occurs_in"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000122",
"lbl" : "example of usage",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "IAO:0000122"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "example_of_usage"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002160",
"lbl" : "only in taxon",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "RO:0002160"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "only_in_taxon"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002225",
"lbl" : "develops from part of",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "RO:0002225"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "develops_from"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "develops_from_part_of"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/contributor",
"lbl" : "contributor",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/contributor"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-contributor"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/creator",
"lbl" : "creator",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/creator"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-creator"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/description",
"lbl" : "description",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/description"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-description"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/publisher",
"lbl" : "publisher",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/publisher"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-publisher"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/source",
"lbl" : "derived from resource",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/source"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-source"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/title",
"lbl" : "title",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/title"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-title"
} ]
}
}, {
"id" : "http://purl.org/dc/terms/description",
"lbl" : "description",
"type" : "PROPERTY"
}, {
"id" : "http://purl.org/dc/terms/isReferencedBy",
"lbl" : "is referenced by",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/terms/isReferencedBy"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dcterms-isReferencedBy"
} ]
}
}, {
"id" : "http://purl.org/dc/terms/license",
"lbl" : "license",
Expand All @@ -246,102 +53,10 @@
"val" : "dcterms-license"
} ]
}
}, {
"id" : "http://purl.org/dc/terms/references",
"lbl" : "references",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/terms/references"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dcterms-references"
} ]
}
}, {
"id" : "http://purl.org/dc/terms/title",
"lbl" : "title",
"type" : "PROPERTY"
}, {
"id" : "http://usefulinc.com/ns/doap#GitRepository",
"lbl" : "Git repository",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://usefulinc.com/ns/doap#GitRepository"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "doap-GitRepository"
} ]
}
}, {
"id" : "http://usefulinc.com/ns/doap#SVNRepository",
"lbl" : "SVN repository",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://usefulinc.com/ns/doap#SVNRepository"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "doap-SVNRepository"
} ]
}
}, {
"id" : "http://usefulinc.com/ns/doap#bug-database",
"lbl" : "bug database",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://usefulinc.com/ns/doap#bug-database"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "doap-bug-database"
} ]
}
}, {
"id" : "http://usefulinc.com/ns/doap#wiki",
"lbl" : "wiki",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://usefulinc.com/ns/doap#wiki"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "doap-wiki"
} ]
}
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref",
"lbl" : "database_cross_reference",
Expand All @@ -350,70 +65,6 @@
"id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym",
"lbl" : "has_exact_synonym",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"lbl" : "shorthand",
"type" : "PROPERTY"
}, {
"id" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"lbl" : "see also",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://www.w3.org/2000/01/rdf-schema#seeAlso"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "seeAlso"
} ]
}
}, {
"id" : "http://xmlns.com/foaf/0.1/depicted_by",
"lbl" : "depicted_by",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://xmlns.com/foaf/0.1/depicted_by"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "depicted_by"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "foaf-depicted_by"
} ]
}
}, {
"id" : "http://xmlns.com/foaf/0.1/homepage",
"lbl" : "homepage",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://xmlns.com/foaf/0.1/homepage"
} ],
"basicPropertyValues" : [ {
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"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "foaf-homepage"
} ]
}
} ]
} ]
}
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