MAINT: transition from setup.py & friends to pyproject.toml (#171)

.copier-answers.yml

@@ -0,0 +1,12 @@
+# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
+_commit: dfb0404
+_src_path: https://github.com/qiime2/q2-setup-template.git
+module_name: fondue
+plugin_name: q2_fondue
+plugin_scripts: null
+project_author_email: ziemski.michal@gmail.com
+project_author_name: Michal Ziemski
+project_description: null
+project_name: q2-fondue
+project_urls_homepage: https://github.com/bokulich-lab/q2-fondue
+project_urls_repository: https://github.com/bokulich-lab/q2-fondue

.gitattributes

@@ -1 +1 @@
-q2_fondue/_version.py export-subst
+pyproject.toml export-subst

.github/workflows/ci-dev.yaml

@@ -10,6 +10,7 @@ jobs:
     uses: qiime2/distributions/.github/workflows/lib-ci-dev.yaml@dev
     with:
       distro: metagenome
+      recipe-path: 'conda-recipe'
       additional-reports-path: ./coverage.xml
       additional-reports-name: coverage
 

.gitignore

@@ -79,3 +79,7 @@ sratoolkit**/**
 # ignore dbGAP permission keys
 **.krt
 **.ngc
+
+# Version file from versioningit
+_version.py
+

Makefile

@@ -16,7 +16,7 @@ test-cov: all
 
 install: all
 	bash install-sra-tools.sh
-	$(PYTHON) setup.py install
+	$(PYTHON) -m pip install -v .
 
 dev: all
 	bash install-sra-tools.sh

conda-recipe/meta.yaml

@@ -0,0 +1,43 @@
+package:
+  name: q2-fondue
+  version: {{ PLUGIN_VERSION }}
+source:
+  path: ..
+build:
+  script: 'make VERBOSE=1
+
+    make install
+
+    '
+requirements:
+  host:
+  - python {{ python }}
+  - setuptools
+  - versioningit
+  - wheel
+  run:
+  - entrezpy >=2.1.2
+  - xmltodict
+  - python {{ python }}
+  - python-dotenv
+  - pyzotero
+  - q2-types {{ qiime2_epoch }}.*
+  - qiime2 {{ qiime2_epoch }}.*
+  - tqdm >=4.62.3
+  build:
+  - setuptools
+  - versioningit
+test:
+  imports:
+  - q2_fondue
+  - qiime2.plugins.fondue
+  requires:
+  - parameterized
+  - coverage
+  - pytest-cov
+  commands:
+  - pytest --cov q2_fondue --cov-report xml:coverage.xml --pyargs q2_fondue
+about:
+  home: https://github.com/bokulich-lab/q2-fondue
+  license: BSD-3-Clause
+  license_family: BSD

pyproject.toml

@@ -0,0 +1,50 @@
+[project]
+name = "q2-fondue"
+authors = [
+    { name = "Michal Ziemski", email = "ziemski.michal@gmail.com" }
+]
+description = "None"
+readme = {file = "README.md", content-type = "text/markdown"}
+license = {file = "LICENSE"}
+dynamic = ["version"]
+
+[project.urls]
+Homepage = "https://github.com/bokulich-lab/q2-fondue"
+Repository = "https://github.com/bokulich-lab/q2-fondue"
+
+[project.entry-points.'qiime2.plugins']
+"q2-fondue" = "q2_fondue.plugin_setup:plugin"
+
+[build-system]
+requires = [
+    "setuptools",
+    "versioningit",
+    "wheel"
+]
+build-backend = "setuptools.build_meta"
+
+[tool.versioningit.vcs]
+method = "git-archive"
+describe-subst = "$Format:%(describe)$"
+default-tag = "0.0.1"
+
+[tool.versioningit.next-version]
+method = "minor"
+
+[tool.versioningit.format]
+distance = "{base_version}+{distance}.{vcs}{rev}"
+dirty = "{base_version}+{distance}.{vcs}{rev}.dirty"
+distance-dirty = "{base_version}+{distance}.{vcs}{rev}.dirty"
+
+[tool.versioningit.write]
+file = "q2-fondue/_version.py"
+
+[tool.setuptools]
+include-package-data = true
+
+[tool.setuptools.packages.find]
+where = ["."]
+include = ["q2_fondue*"]
+
+[tool.setuptools.package-data]
+q2_fondue = ["**/*"]

q2_fondue/__init__.py

@@ -8,8 +8,9 @@
 
 import importlib
 
-from ._version import get_versions
-__version__ = get_versions()['version']
-del get_versions
+try:
+    from ._version import __version__
+except ModuleNotFoundError:
+    __version__ = '0.0.0+notfound'
 
 importlib.import_module('q2_fondue.types')