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MAINT: update citations (#144)
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misialq authored Sep 30, 2022
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If you use `fondue` in your research, please cite the following:

Michal Ziemski, Anja Adamov, Lina Kim, Lena Flörl, Nicholas A. Bokulich. 2022. Reproducible acquisition, management, and meta-analysis of nucleotide sequence (meta)data using q2-fondue.
bioRxiv 2022.03.22.485322; doi: https://doi.org/10.1101/2022.03.22.485322
_Bioinformatics; doi: https://doi.org/10.1093/bioinformatics/btac639


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58 changes: 30 additions & 28 deletions q2_fondue/citations.bib
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@article {Ziemski2022,
author = {Ziemski, Michal and Adamov, Anja and Kim, Lina and Fl{\"o}rl, Lena and Bokulich, Nicholas A.},
author = {Ziemski, Michal and Adamov, Anja and Kim, Lina and Flörl, Lena and Bokulich, Nicholas A},
title = {Reproducible acquisition, management, and meta-analysis of nucleotide sequence (meta)data using q2-fondue},
year = {2022},
doi = {10.1101/2022.03.22.485322},
URL = {https://www.biorxiv.org/content/early/2022/03/25/2022.03.22.485322},
journal = {bioRxiv}
month = {09},
doi = {10.1093/bioinformatics/btac639},
URL = {https://doi.org/10.1093/bioinformatics/btac639},
journal = {Bioinformatics},
issn = {1367-4803},
}

@article{Buchmann2019,
author = {Buchmann, Jan P and Holmes, Edward C},
doi = {10.1093/bioinformatics/btz385},
editor = {Wren, Jonathan},
journal = {Bioinformatics},
month = {nov},
number = {21},
pages = {4511--4514},
publisher = {Oxford University Press},
title = {Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases},
url = {https://academic.oup.com/bioinformatics/article/35/21/4511/5488119},
volume = {35},
year = {2019}
author = {Buchmann, Jan P and Holmes, Edward C},
doi = {10.1093/bioinformatics/btz385},
editor = {Wren, Jonathan},
journal = {Bioinformatics},
month = {nov},
number = {21},
pages = {4511--4514},
publisher = {Oxford University Press},
title = {Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases},
url = {https://academic.oup.com/bioinformatics/article/35/21/4511/5488119},
volume = {35},
year = {2019}
}

@misc{SraToolkit,
name = {SRA Toolkit},
author = {SRA Toolkit Development Team},
version = {2.9.6},
url = {https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software}
name = {SRA Toolkit},
author = {SRA Toolkit Development Team},
version = {2.9.6},
url = {https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software}
}

@misc{stephan_hugel_2019_2917290,
author = {Stephan Hügel and Peter Gerdes and Patrick Fournier and
author = {Stephan Hügel and Peter Gerdes and Patrick Fournier and
emuzie and Patrick Golden and jghauser and Stefan Frühwirth and
Sean Takats and Pablo Orduña and Merlin and Erik Hetzner and
Christian Brodbeck and Avram Lyon and A Lee},
title = {urschrei/pyzotero: Zenodo Release},
month = {may},
year = 2019,
publisher = {Zenodo},
version = {v1.3.15},
doi = {10.5281/zenodo.2917290},
url = {https://doi.org/10.5281/zenodo.2917290}
title = {urschrei/pyzotero: Zenodo Release},
month = {may},
year = 2019,
publisher = {Zenodo},
version = {v1.3.15},
doi = {10.5281/zenodo.2917290},
url = {https://doi.org/10.5281/zenodo.2917290}
}

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