GitHub - bkotzen/infectivity-neutralization-analysis: Perform Bayesian regression to find the mutation-level contributions to infectivity and neutralization using the CEPI data.

bkotzen / infectivity-neutralization-analysis Public

Perform Bayesian regression to find the mutation-level contributions to infectivity and neutralization using the CEPI data.

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
.ipynb_checkpoints		.ipynb_checkpoints
__pycache__		__pycache__
archive		archive
data		data
figs		figs
misc		misc
model_infectivity		model_infectivity
model_neutralization		model_neutralization
notebooks		notebooks
results		results
scripts/covdb		scripts/covdb
Comparitive_Analysis.ipynb		Comparitive_Analysis.ipynb
Correlations.ipynb		Correlations.ipynb
Lasso-Models.ipynb		Lasso-Models.ipynb
Regress-CovDB-fullypooled.ipynb		Regress-CovDB-fullypooled.ipynb
Regress-CovDB-partialpool-MCMC.ipynb		Regress-CovDB-partialpool-MCMC.ipynb
Regress-CovDB-partialpool.ipynb		Regress-CovDB-partialpool.ipynb
Regress-Infectivity-DupMuts-Log10.ipynb		Regress-Infectivity-DupMuts-Log10.ipynb
Regress-Neutralization-CovDB.ipynb		Regress-Neutralization-CovDB.ipynb
Regress-Neutralization-SVI.ipynb		Regress-Neutralization-SVI.ipynb
Regress-Neutralization-backup.ipynb		Regress-Neutralization-backup.ipynb
Regress-Neutralization.ipynb		Regress-Neutralization.ipynb
escapecalculator.py		escapecalculator.py
test_webscrape.ipynb		test_webscrape.ipynb