Code

Arm swing quantification#94

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nienketimmermans merged 63 commits intomainbiomarkersParkinson/paradigma:mainfrom arm-swing-quantificationbiomarkersParkinson/paradigma:arm-swing-quantificationCopy head branch name to clipboardJan 9, 2025

+1,084-875

Commits

Commits on Dec 18, 2024

• Set lower bound MFCCs to filter cutoff

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Commits on Dec 19, 2024

• Add flexibility to arm swing feature extraction methods

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• Add flexibility to tabulating windows methods

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• Merge branch 'create-prepared-data' of github.com:biomarkersParkinson/paradigma into minor-pipeline-updates

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• Add flexibility to tabulating windows methods and update angle features

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• Remove redundant features

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Commits on Dec 30, 2024

• Merge branch 'main' of github.com:biomarkersParkinson/paradigma into minor-pipeline-updates

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• Simplify

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• Updating Poetry

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• Remove angle and velocity from preprocessing

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Commits on Dec 31, 2024

• Change rotation axes

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• Adjust parameters segmentation

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• Add flexibility for pathing

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• Return a Series instead of df

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• ensure features dont scale when storing

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• Update tabulate windows

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Commits on Jan 2, 2025

• Vectorize merging of predictions with timestamps

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• Add flexibility to filtering gait parameters

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• Merge branch 'main' of github.com:biomarkersParkinson/paradigma into minor-pipeline-updates

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• Solve conflict

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• Continue process when dataframe is empty

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Commits on Jan 3, 2025

• Modify quantification

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• Modify quantification

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• Typo

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• Add flexibility for pred proba to merging

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• Add flexibility for pred proba to merging

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• Add flexibility for pred proba to merging

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  cfe5faf

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• Solve numpy/list bug

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• Solve numpy/list bug

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• Solve numpy/list bug

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  28f8231

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• Solve numpy/list bug

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• Start catching errors

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• Start catching errors

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  e540af8

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• Fix np.nan issue

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• Fix np.nan issue

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• Reduce memory reqs

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• Temp for debugging

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• Temp for debugging

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• Typo

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Commits on Jan 6, 2025

• Expand feature extraction docs

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• Update notebooks

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• Add '1' to MFCC filter points

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Commits on Jan 7, 2025

• Modify test data

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• Change mfcc param

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• Change mfcc param

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• Structure

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• Reset legacy for the time being

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• Adjust test scripts to changes

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• Adjust tremor to changes

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• structure docstrings

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• Improve consistency of docstrings

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• Structure testing

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• Update test data

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• Resolve pytype error

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• Merge branch 'main' of github.com:biomarkersParkinson/paradigma into arm-swing-quantification

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• Adjust tabulate_windows to new version

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• Ensure first column is returned for PPG

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Commits on Jan 8, 2025

• Solve issues raised by reviewer

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• Resolve conflict

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• Rerun notebooks ppg

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• Change scalers, classifiers and thresholds

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• Update test files

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• Add aggregation of quantification

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