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+ Convert new MaxQuant format of PTMs to the old format
+ MSstats messages are not displayed by default when using artmsQuantification.
The user can enable MSstats messages by selecting "display_msstats = TRUE"
+ Prevent artmsWriteConfigYamlFile() from overwriting an existing configuration
file unless the user allows it (overwrite = TRUE)
+ printPDF now available in all functions printing plots to pdf, which means that
notebooks can be used and print all plots. Default is still printPDF = TRUE
+ Fix bugs
#166#165
enable
printPDF = FALSE
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