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Add tiling to speed CPU code #14

Merged
merged 2 commits into from
Oct 18, 2022
Merged

Add tiling to speed CPU code #14

merged 2 commits into from
Oct 18, 2022

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sfiligoi
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Past versions relied on sharing of memory between core.
Make this explicit now.

@sfiligoi
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CC @wasade

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On a EPYC 7302, computing 50k EMP+AG:
The Unweighted goes from 370s to 300s.
The Weighted Normalize goes from 1.3ks to 1.1ks.

@sfiligoi sfiligoi merged commit e9eaffc into biocore:main Oct 18, 2022
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