Merge pull request #2 from mortonjt/master

fix typo
biocore · Jul 3, 2019 · f19ffb0 · f19ffb0
2 parents 57e6fbd + 2873ab5
commit f19ffb0
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Showing 2 changed files with 1 addition and 16 deletions.
diff --git a/setup.py b/setup.py
@@ -31,7 +31,6 @@
 description = ('Vanilla regression methods for microbiome '
                'differential abundance analysis')
 
-
 long_description = description
 
 # version parsing from __init__ pulled from Flask's setup.py

diff --git a/songbird/q2/_transformer.py b/songbird/q2/_transformer.py
@@ -1,7 +1,7 @@
 import qiime2
 import pandas as pd
 
-from songbird.q2 import SongbirdStatsFormat, DifferentialFormat
+from songbird.q2 import SongbirdStatsFormat
 from songbird.q2.plugin_setup import plugin
 
 
@@ -15,17 +15,3 @@ def _2(obj: qiime2.Metadata) -> SongbirdStatsFormat:
     ff = SongbirdStatsFormat()
     obj.save(str(ff))
     return ff
-
-
-@plugin.register_transformer
-def _3(ff: DifferentialFormat) -> pd.DataFrame:
-    df = pd.read_csv(str(ff), sep='\t', comment='#', skip_blank_lines=True,
-                     header=0, dtype=object, index_col=0)
-    return df
-
-
-@plugin.register_transformer
-def _4(df: pd.DataFrame) -> DifferentialFormat:
-    ff = DifferentialFormat()
-    df.to_csv(str(ff), sep='\t', header=True, index=True)
-    return ff