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mortonjt authored Jun 29, 2017
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Expand Up @@ -33,15 +33,22 @@ To install the most up to date version of gneiss, run the following command
pip install git+https://github.com/biocore/gneiss.git
```

# Examples

IPython notebooks demonstrating some of the modules in gneiss can be found as follows
# Tutorials

* [What are balances](https://github.com/biocore/gneiss/blob/master/ipynb/balance_trees.ipynb)

# Qiime2 tutorials

* [Linear regression on balances in the 88 soils](https://biocore.github.io/gneiss/docs/v0.4.0/tutorials/qiime2/88soils-qiime2-tutorial.html)
* [Linear mixed effects models on balances in a CF study](https://biocore.github.io/gneiss/docs/v0.4.0/tutorials/qiime2/cfstudy-qiime2-tutorial.html)
* [Linear regression on balances in the Chronic Fatigue Syndrome](https://biocore.github.io/gneiss/docs/v0.4.0/tutorials/qiime2/cfs-qiime2-tutorial.html)

# Python tutorials

* [Linear regression on balances in the 88 soils](https://biocore.github.io/gneiss/docs/v0.4.0/tutorials/python/88soils-python-tutorial.html)
* [Linear mixed effects models on balances in a CF study](https://biocore.github.io/gneiss/docs/v0.4.0/tutorials/python/cfstudy-python-tutorial.html)
* [Linear regression on balances in the Chronic Fatigue Syndrome](https://biocore.github.io/gneiss/docs/v0.4.0/tutorials/python/cfs-python-tutorial.html)


If you use this software package in your own publications, please cite it at
```
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