Skip to content

Commit

Permalink
Adding links
Browse files Browse the repository at this point in the history
  • Loading branch information
mortonjt committed Aug 23, 2016
1 parent e5df89c commit 13ccf0d
Show file tree
Hide file tree
Showing 2 changed files with 4 additions and 0 deletions.
2 changes: 2 additions & 0 deletions ipynb/88soils.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,8 @@
"source": [
"[Previous](https://github.com/biocore/gneiss/blob/master/ipynb/balance_trees.ipynb) \n",
"\n",
"[Next](https://github.com/biocore/gneiss/blob/master/ipynb/88soils.ipynb) \n",
"\n",
"In this study, there were 88 soil samples collected from North and South America. Each of these soil samples had a pH measurement. From this [paper](http://www.ncbi.nlm.nih.gov/pubmed/19502440), it was observed that pH plays a primary role in community assemblage. Here, we will show that pH by itself can actually predict the microbial abundances, using balance trees."
]
},
Expand Down
2 changes: 2 additions & 0 deletions ipynb/cfstudy.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,8 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"[Previous](https://github.com/biocore/gneiss/blob/master/ipynb/88soils.ipynb)\n",
"\n",
"In this study, there were 18 patients with cystic fibrosis. The hypothesis was that there were two main communities at play in the CF lung. One of these communities thrives at low pH, and the other community thrives at high pH. To test this, sputum samples were divided among 8 tubes, and each of the tubes was perturbed with a different pH. Here we will calculate balances, and test how these balances change with respect to pH, using linear mixed effects models."
]
},
Expand Down

0 comments on commit 13ccf0d

Please sign in to comment.