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mortonjt authored Jun 23, 2017
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Expand Up @@ -14,10 +14,23 @@ gneiss is currently in alpha. We are actively developing it, and __backward-inc

# Installation

To install this package, it is recommended to use conda. An environment can installed as follows
To install this package, it is recommended to use conda. First make sure that the appropriate channels are configured.

```
conda create -n gneiss_env gneiss python=3.5 -c biocore -c qiime2
conda config --add channels https://conda.anaconda.org/bioconda
conda config --add channels https://conda.anaconda.org/biocore
conda config --add channels https://conda.anaconda.org/qiime2
conda config --add channels https://conda.anaconda.org/qiime2/label/r2017.6
```

Then gneiss can be installed in a conda environment as follows
```
conda create -n gneiss_env gneiss
```
To install the most up to date version of gneiss, run the following command

```
pip install git+https://github.com/biocore/gneiss.git
```

# Examples
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