Adding IPython notebook for PTSD mice study

biocore · Sep 1, 2016 · 0f60173 · 0f60173
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diff --git a/README.md b/README.md
@@ -45,3 +45,4 @@ IPython notebooks demonstrating some of the modules in gneiss can be found as fo
 * [What are balances](https://github.com/biocore/gneiss/blob/master/ipynb/balance_trees.ipynb)
 * [Linear regression on balances in the 88 soils](https://github.com/biocore/gneiss/blob/master/ipynb/88soils.ipynb)
 * [Linear mixed effects models on balances in a CF study](https://github.com/biocore/gneiss/blob/master/ipynb/cfstudy.ipynb)
+* [Linear mixed effects models on balances in a PTSD study](https://github.com/biocore/gneiss/blob/master/ipynb/ptsd_mice.ipynb)
diff --git a/ipynb/cfstudy.ipynb b/ipynb/cfstudy.ipynb
@@ -6,6 +6,8 @@
    "source": [
     "[Previous](https://github.com/biocore/gneiss/blob/master/ipynb/88soils.ipynb)\n",
     "\n",
+    "[Next](https://github.com/biocore/gneiss/blob/master/ipynb/ptsd_mice.ipynb)\n",
+    "\n",
     "In this study, there were 18 patients with cystic fibrosis.  The hypothesis was that there were two main communities at play in the CF lung.  One of these communities thrives at low pH, and the other community thrives at high pH.  To test this, sputum samples were divided among 8 tubes, and each of the tubes was perturbed with a different pH.  Here we will calculate balances, and test how these balances change with respect to pH, using linear mixed effects models."
    ]
   },

diff --git a/ipynb/data/97_otus.tree b/ipynb/data/97_otus.tree