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ResourceWarning: unclosed file #801

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sjanssen2 opened this issue Dec 13, 2018 · 0 comments · Fixed by #802
Closed

ResourceWarning: unclosed file #801

sjanssen2 opened this issue Dec 13, 2018 · 0 comments · Fixed by #802

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@sjanssen2
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I am getting a resource warning, when loading a biom table like this:

table = biom.load_table(file_biom)

/home/sjanssen/miniconda2/envs/ggmap/lib/python3.5/site-packages/biom/util.py:393: ResourceWarning: unclosed file <_io.BufferedReader name='/home/sjanssen/miniconda /envs/notebookServer/src/ggmap/ggmap/test/data/diffAbundance/counts.biom'>
  return open(fp, 'rb').read(2) == b'\x1f\x8b'
ElDeveloper added a commit to ElDeveloper/biom-format that referenced this issue Dec 13, 2018
@ElDeveloper
BUG: Fix open file handle
e302e7e 
Fixes biocore#801
@ElDeveloper ElDeveloper mentioned this issue Dec 13, 2018
Merged
wasade pushed a commit that referenced this issue Aug 27, 2019
@ElDeveloper @wasade
BUG: Fix open file handle (#802)
38e64fc 
Fixes #801
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BUG: Fix open file handle ElDeveloper/biom-format
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@sjanssen2