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Update spaln to 2.4.4 #28436

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merged 4 commits into from
May 11, 2021
Merged

Update spaln to 2.4.4 #28436

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c1c740b
Update spaln
ljyanesm May 11, 2021
32fced2
Reset build number
ljyanesm May 11, 2021
f994f7b
Update patchfile
ljyanesm May 11, 2021
08454ea
Only apply LDFLAGS to binaries
ljyanesm May 11, 2021
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8 changes: 4 additions & 4 deletions recipes/spaln/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,20 +1,20 @@
{% set name = "spaln" %}
{% set version = "2.4.03" %}
{% set sha256 = "6b7d19392485827b1711bbafdd9305d6ed33f92b4e4ba8ec0cfad4dc20364b23" %}
{% set version = "2.4.4" %}
{% set sha256 = "fb41361ee589431c6216ada6b42b3f87e36ecb619e41998a3981f89681a721b9" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://github.com/ogotoh/{{ name }}/archive/Ver.{{ version }}.tar.gz
url: https://github.com/ogotoh/{{ name }}/archive/refs/tags/ver.{{ version }}.tar.gz
sha256: {{ sha256 }}
patches:
- patch-makefile_pl # add a Makefile.PL for the Perl part of the code
- patch-makefile_ldflags # add a LDFLAGS variable to the Makefile

build:
number: 1
number: 0

requirements:
build:
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28 changes: 14 additions & 14 deletions recipes/spaln/patch-makefile_ldflags
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Original file line number Diff line number Diff line change
@@ -1,20 +1,20 @@
--- src/Makefile.in.orig 2019-04-11 13:29:08.707327000 +0200
+++ src/Makefile.in 2019-04-11 13:44:56.235326000 +0200
@@ -76,13 +76,13 @@
--- src/Makefile.in 2021-04-26 03:36:44.000000000 +0100
+++ src/Makefile.in.ldflags 2021-05-11 16:59:24.000000000 +0100
@@ -82,13 +82,13 @@
ls $(SRC) $(HDR)

spaln: spaln.o blksrc.o $(SLIB)
- $(CXX) -o spaln spaln.o blksrc.o $(SLIB) $(LLIB)
+ $(CXX) $(LDFLAGS) -o spaln spaln.o blksrc.o $(SLIB) $(LLIB)
sortgrcd: sortgrcd.c $(SLIB)
- $(CXX) -o sortgrcd sortgrcd.c $(SLIB) $(LLIB)
+ $(CXX) $(LDFLAGS) -o sortgrcd sortgrcd.c $(SLIB) $(LLIB)
makdbs: makdbs.c dbs.h seq.h bitpat.h $(SLIB)
- $(CXX) -o makdbs makdbs.c $(SLIB) $(LLIB)
+ $(CXX) $(LDFLAGS) -o makdbs makdbs.c $(SLIB) $(LLIB)
makmdm: makmdm.c mdm.h $(CLIB)
- $(CXX) -o makmdm makmdm.c $(CLIB) $(LLIB)
+ $(CXX) $(LDFLAGS) -o makmdm makmdm.c $(CLIB) $(LLIB)
sortgrcd: sortgrcd.cc $(SLIB)
- $(CXX) -o sortgrcd sortgrcd.cc $(SLIB) $(LLIB)
+ $(CXX) $(LDFLAGS) -o sortgrcd sortgrcd.cc $(SLIB) $(LLIB)
makdbs: makdbs.cc dbs.h seq.h bitpat.h $(SLIB)
- $(CXX) -o makdbs makdbs.cc $(SLIB) $(LLIB)
+ $(CXX) $(LDFLAGS) -o makdbs makdbs.cc $(SLIB) $(LLIB)
makmdm: makmdm.cc mdm.h $(CLIB)
- $(CXX) -o makmdm makmdm.cc $(CLIB) $(LLIB)
+ $(CXX) $(LDFLAGS) -o makmdm makmdm.cc $(CLIB) $(LLIB)

spaln.o: spaln.c seq.h aln.h
bitpat.o: bitpat.c bitpat.h
spaln.o: spaln.cc seq.h aln.h
bitpat.o: bitpat.cc bitpat.h