Update snpeff container image to 5.0--hdfd78af_1.

bigdatagenomics · Nov 1, 2021 · 90ba071 · 90ba071
1 parent 76201f0
commit 90ba071
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/SnpEff.scala b/core/src/main/scala/org/bdgenomics/cannoli/SnpEff.scala
@@ -39,8 +39,8 @@ class SnpEffArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the SnpEff executable. Defaults to snpEff.")
   var executable: String = "snpEff"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/snpeff:4.3.1t--4.")
-  var image: String = "quay.io/biocontainers/snpeff:4.3.1t--4"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/snpeff:5.0--hdfd78af_1.")
+  var image: String = "quay.io/biocontainers/snpeff:5.0--hdfd78af_1"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
@@ -51,8 +51,8 @@ class SnpEffArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-use_singularity", usage = "If true, uses Singularity to launch SnpEff.")
   var useSingularity: Boolean = false
 
-  @Args4jOption(required = false, name = "-database", usage = "SnpEff database name. Defaults to GRCh38.86.")
-  var database: String = "GRCh38.86"
+  @Args4jOption(required = false, name = "-database", usage = "SnpEff database name. Defaults to GRCh38.99.")
+  var database: String = "GRCh38.99"
 }
 
 /**