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Use separate filtersFailed and filtersPassed arrays for variant quality filters #88

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Jul 18, 2016
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Use separate filtersFailed and filtersPassed arrays for variant quality filters #88

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13 changes: 9 additions & 4 deletions src/main/resources/avro/bdg.avdl
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Expand Up @@ -505,11 +505,16 @@ enum GenotypeType {
// stat computed from all samples and stored inside the INFO line.
record VariantCallingAnnotations {

// FILTER: True or false implies that filters were applied and this variant PASSed or not.
// While 'null' implies not filters were applied.
union { null, boolean } variantIsPassing = null;
array <string> variantFilters = [];
/**
A list of filters (normally quality filters) this variant has failed.
*/
array<string> filtersFailed = [];

/**
A list of filters (normally quality filters) this variant has passed.
*/
array<string> filtersPassed = [];

/**
True if the reads covering this site were randomly downsampled to reduce coverage.
*/
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