Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Allow validation stringency to be set in AnySAMOutFormatter #1703

Closed
fnothaft opened this issue Aug 30, 2017 · 1 comment
Closed

Allow validation stringency to be set in AnySAMOutFormatter #1703

fnothaft opened this issue Aug 30, 2017 · 1 comment
Assignees
@fnothaft
Milestone
0.23.0

Comments

@fnothaft
Copy link
Member

fnothaft commented Aug 30, 2017 •
edited
Loading

Needed to do with GRCh38 @SQ headerline wonkyness in bigdatagenomics/cannoli#65.
@fnothaft fnothaft self-assigned this Aug 30, 2017
fnothaft added a commit to fnothaft/adam that referenced this issue Aug 30, 2017
@fnothaft
[ADAM-1703] Expose ValidationStringency in AnySAMOutFormatter.
69dcfa5 
Resolves bigdatagenomics#1703.
@fnothaft
Copy link
Member Author

Associated issue: amplab/snap#107

@fnothaft fnothaft mentioned this issue Aug 30, 2017
Merged
@heuermh heuermh modified the milestone: 0.23.0 Sep 1, 2017
fnothaft added a commit to fnothaft/adam that referenced this issue Sep 6, 2017
@fnothaft
[ADAM-1703] Expose ValidationStringency in AnySAMOutFormatter.
9a08d2c 
Resolves bigdatagenomics#1703.
fnothaft added a commit to fnothaft/adam that referenced this issue Sep 6, 2017
@fnothaft
[ADAM-1703] Expose ValidationStringency in AnySAMOutFormatter.
c8550bc 
Resolves bigdatagenomics#1703.
fnothaft added a commit to fnothaft/adam that referenced this issue Sep 12, 2017
@fnothaft
[ADAM-1703] Expose ValidationStringency in AnySAMOutFormatter.
f386347 
Resolves bigdatagenomics#1703.
@heuermh heuermh mentioned this issue Mar 26, 2018
Closed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@fnothaft fnothaft

Labels
None yet
Projects
None yet
Milestone
0.23.0
Development

No branches or pull requests
2 participants
@heuermh @fnothaft