Update nextflow_schema.json

bigbio · Jun 10, 2022 · 366f7ee · 366f7ee
1 parent a76a26f
commit 366f7ee
Showing 1 changed file with 0 additions and 54 deletions.
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -164,60 +164,6 @@
                 }
             }
         },
-        "cosmic_variant_proteomes": {
-            "title": "COSMIC variant proteomes",
-            "type": "object",
-            "description": "COSMIC variant proteins parameters",
-            "default": "",
-            "properties": {
-                "cosmic": {
-                    "type": "boolean",
-                    "description": "Download COSMIC mutation files and generate protein database"
-                },
-                "cosmic_celllines": {
-                    "type": "string",
-                    "description": "Download COSMIC cell line files and generate protein database"
-                },
-                "cosmic_user_name": {
-                    "type": "string",
-                    "description": "User name (or email) for COSMIC account"
-                },
-                "cosmic_password": {
-                    "type": "string",
-                    "description": "Password for COSMIC account"
-                },
-                "cosmic_config": {
-                    "type": "string",
-                    "description": "Path to configuration file for parameters in generating"
-                },
-                "cosmic_cancer_type": {
-                    "type": "string",
-                    "default": "all",
-                    "description": "Specify a tissue type to limit the COSMIC mutations to a particular caner type"
-                },
-                "cosmic_cellline_name": {
-                    "type": "string",
-                    "default": "all",
-                    "description": "Specify a sample name to limit the COSMIC cell line mutations to a particular  cell line"
-                },
-                "cosmicgenes": {
-                    "type": "string",
-                    "description": "Loading local cosmic protein database"
-                },
-                "cosmicmutations": {
-                    "type": "string",
-                    "description": "Loading local COSMIC mutation files"
-                },
-                "cosmiccelllines_genes": {
-                    "type": "string",
-                    "description": "Loading local cosmic_celllines protein database"
-                },
-                "cosmiccelllines_mutations": {
-                    "type": "string",
-                    "description": "Loading local COSMIC cell line files"
-                }    
-            }
-        },
         "input_output_options": {
             "title": "Input/output options",
             "type": "object",