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Integrate another bioMLmodel (biomd0000001076) #1371

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merged 18 commits into from
Jan 5, 2024
Merged

Integrate another bioMLmodel (biomd0000001076) #1371

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614f988
Add tool BIOMD0000001076
anuprulez Dec 21, 2023
c4306b7
update tool desc
anuprulez Dec 21, 2023
47a8deb
update tool desc
anuprulez Dec 21, 2023
345988c
add version
anuprulez Dec 21, 2023
67346d8
update
anuprulez Dec 21, 2023
b50b15f
update test
anuprulez Dec 21, 2023
4b6e947
remove print
anuprulez Dec 21, 2023
cabdbe7
add creator
bgruening Dec 21, 2023
4c27f2d
update tool
anuprulez Dec 22, 2023
1ed1b14
update doi
anuprulez Dec 22, 2023
672437a
Update tools/biomodelsML/biomodels_BIOMD0000001076.xml
anuprulez Jan 3, 2024
ee9cc55
Merge branch 'bgruening:master' into integrate_BIOMD0000001076
anuprulez Jan 3, 2024
48bf298
remove xlsx
anuprulez Jan 3, 2024
27adac4
test bibtext to fix test
anuprulez Jan 3, 2024
8df994c
revert to type=doi
anuprulez Jan 3, 2024
9fa0e1c
remove creator tag
anuprulez Jan 3, 2024
86695d5
update profile
anuprulez Jan 3, 2024
80e6548
update embedded script name
anuprulez Jan 5, 2024
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5 changes: 3 additions & 2 deletions tools/biomodelsML/biomodels_BIOMD0000001076.xml
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Expand Up @@ -6,7 +6,7 @@
<creator>
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Is that ok for you?

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yes, it works. Thanks a lot :)

<organization name="EMBL’s European Bioinformatics Institute (EMBL-EBI)" url="https://www.ebi.ac.uk/biomodels/" email="biomodels-net-support@lists.sf.net" />
<person name="Anup Kumar" email="kumara@informatik.uni-freiburg.de" />
</creator
</creator>
<requirements>
<container type="docker">docker.io/anupkumar/biomodels_biomd0000001076:@VERSION@</container>
</requirements>
Expand Down Expand Up @@ -94,7 +94,8 @@ Returns predicted data as a tabular file - the predictions are concatenated as a
@ARTICLE{BIOMD0000001076,
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maybe that DOI 10.1038/s41598-020-65584-y - maybe in addition?

Author = {López-Cortés A, Cabrera-Andrade A, Vázquez-Naya JM, Pazos A, Gonzáles-Díaz H, Paz-Y-Miño C, Guerrero S, Pérez-Castillo Y, Tejera E, Munteanu CR},
title = {{Prediction of breast cancer proteins involved in immunotherapy, metastasis, and RNA-binding using molecular descriptors and artificial neural networks. Scientific reports , 5/ 2020 , Volume 10 , Issue 1 , pages: 8515 , PubMed ID: 32444848}},
url = {https://www.ebi.ac.uk/biomodels/BIOMD0000001076}
url = {https://www.ebi.ac.uk/biomodels/BIOMD0000001076},
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What I meant is type doi.

doi = {10.1038/s41598-020-65584-y}
}
</citation>
</citations>
Expand Down