update rbpbench tool-data conf (#1362)

bgruening · Dec 3, 2023 · f4a6b79 · f4a6b79
1 parent 0e21bd6
commit f4a6b79
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Showing 4 changed files with 3 additions and 245 deletions.
diff --git a/tools/rna_tools/rbpbench/batch_table_wrapper.py b/tools/rna_tools/rbpbench/batch_table_wrapper.py
diff --git a/...p_ids.catrapid.omics.v2.1.human.6plus.txt → ...atrapid.omics.v2.1.human.6plus.loc.sample b/...p_ids.catrapid.omics.v2.1.human.6plus.txt → ...atrapid.omics.v2.1.human.6plus.loc.sample
@@ -256,4 +256,4 @@ ZNF326
 ZNF622
 ZNF638
 ZRANB2
-SLBP
+SLBP
diff --git a/tools/rna_tools/rbpbench/tool_data_table_conf.xml.sample b/tools/rna_tools/rbpbench/tool_data_table_conf.xml.sample
@@ -7,6 +7,6 @@
     <!-- IDs table file -->
     <table name="rbp_ids_table" comment_char="#">
         <columns>value</columns>
-        <file path="${__HERE__}/tool-data/rbp_ids.catrapid.omics.v2.1.human.6plus.txt" />
+        <file path="tool-data/rbp_ids.catrapid.omics.v2.1.human.6plus.loc" />
     </table>
 </tables>
diff --git a/tools/rna_tools/rbpbench/tool_data_table_conf.xml.test b/tools/rna_tools/rbpbench/tool_data_table_conf.xml.test
@@ -7,6 +7,6 @@
     <!-- IDs table file -->
     <table name="rbp_ids_table" comment_char="#">
         <columns>value</columns>
-        <file path="${__HERE__}/tool-data/rbp_ids.catrapid.omics.v2.1.human.6plus.txt" />
+        <file path="${__HERE__}/tool-data/rbp_ids.catrapid.omics.v2.1.human.6plus.loc.sample" />
     </table>
 </tables>
-Original file line number
+Diff line change
@@ Expand Up / @@ -256,4 +256,4 @@ ZNF326 @@
     ZNF622
     ZNF638
     ZRANB2
-    SLBP
+    SLBP