bug fix

balabanmetin · Mar 10, 2022 · 1f75797 · 1f75797
1 parent 2d7edfa
commit 1f75797
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/uDance/subsample_partition.py b/uDance/subsample_partition.py
@@ -100,7 +100,7 @@ def subsample_partition(partition_output_dir, cutoff):
         prevspecies = set(map(lambda x: x.strip(), f.readlines()))
     newspecieslst = list(prevspecies.difference(pruned_species))
     with open(join(partition_output_dir, "species.txt"), "w") as f:
-        f.write("\n".join(pruned_species) + "\n")
+        f.write("\n".join(newspecieslst) + "\n")
 
     for g in genes:
         aln_dict = dict()