Update skalo.rs #290
Annotations
36 warnings
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doc list item overindented:
src/merge_ska_array.rs#L384
warning: doc list item overindented
--> src/merge_ska_array.rs:384:9
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384 | /// the denominator of mismatch proportion
| ^^^^ help: try using ` ` (2 spaces)
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_overindented_list_items
= note: `#[warn(clippy::doc_overindented_list_items)]` on by default
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manually reimplementing `div_ceil`:
src/ska_dict/split_kmer.rs#L323
warning: manually reimplementing `div_ceil`
--> src/ska_dict/split_kmer.rs:323:26
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323 | let middle_idx = (self.k + 1) / 2 - 1;
| ^^^^^^^^^^^^^^^^ help: consider using `.div_ceil()`: `self.k.div_ceil(2)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#manual_div_ceil
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manually reimplementing `div_ceil`:
src/ska_dict/split_kmer.rs#L95
warning: manually reimplementing `div_ceil`
--> src/ska_dict/split_kmer.rs:95:26
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95 | let middle_idx = (k + 1) / 2 - 1;
| ^^^^^^^^^^^ help: consider using `.div_ceil()`: `k.div_ceil(2)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#manual_div_ceil
= note: `#[warn(clippy::manual_div_ceil)]` on by default
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operator precedence might not be obvious:
src/ska_dict/bloom_filter.rs#L63
warning: operator precedence might not be obvious
--> src/ska_dict/bloom_filter.rs:63:9
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63 | / 1 << (key & 63)
64 | | | 1 << ((key >> 6) & 63)
| |____________________________________^ help: consider parenthesizing your expression: `(1 << (key & 63)) | (1 << ((key >> 6) & 63))`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bloom_filter.rs#L63
warning: operator precedence might not be obvious
--> src/ska_dict/bloom_filter.rs:63:9
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63 | / 1 << (key & 63)
64 | | | 1 << ((key >> 6) & 63)
65 | | | 1 << ((key >> 12) & 63)
| |_____________________________________^
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
help: consider parenthesizing your expression
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63 ~ 1 << (key & 63)
64 + | 1 << ((key >> 6) & 63) | (1 << ((key >> 12) & 63))
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operator precedence might not be obvious:
src/ska_dict/bloom_filter.rs#L63
warning: operator precedence might not be obvious
--> src/ska_dict/bloom_filter.rs:63:9
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63 | / 1 << (key & 63)
64 | | | 1 << ((key >> 6) & 63)
65 | | | 1 << ((key >> 12) & 63)
66 | | | 1 << ((key >> 18) & 63)
| |_____________________________________^
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
help: consider parenthesizing your expression
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63 ~ 1 << (key & 63)
64 + | 1 << ((key >> 6) & 63)
65 + | 1 << ((key >> 12) & 63) | (1 << ((key >> 18) & 63))
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operator precedence might not be obvious:
src/ska_dict/bloom_filter.rs#L63
warning: operator precedence might not be obvious
--> src/ska_dict/bloom_filter.rs:63:9
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63 | / 1 << (key & 63)
64 | | | 1 << ((key >> 6) & 63)
65 | | | 1 << ((key >> 12) & 63)
66 | | | 1 << ((key >> 18) & 63)
67 | | | 1 << ((key >> 24) & 63)
| |_____________________________________^
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
help: consider parenthesizing your expression
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63 ~ 1 << (key & 63)
64 + | 1 << ((key >> 6) & 63)
65 + | 1 << ((key >> 12) & 63)
66 + | 1 << ((key >> 18) & 63) | (1 << ((key >> 24) & 63))
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L249
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:249:17
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249 | self = (self >> 64 & 0x0000000000000000FFFFFFFFFFFFFFFF)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 64) & 0x0000000000000000FFFFFFFFFFFFFFFF`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L249
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:249:16
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249 | self = (self >> 64 & 0x0000000000000000FFFFFFFFFFFFFFFF)
| ________________^
250 | | | (self & 0x0000000000000000FFFFFFFFFFFFFFFF) << 64;
| |_______________________________________________________________^ help: consider parenthesizing your expression: `(self >> 64 & 0x0000000000000000FFFFFFFFFFFFFFFF) | ((self & 0x0000000000000000FFFFFFFFFFFFFFFF) << 64)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L247
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:247:17
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247 | self = (self >> 32 & 0x00000000FFFFFFFF00000000FFFFFFFF)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 32) & 0x00000000FFFFFFFF00000000FFFFFFFF`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L247
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:247:16
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247 | self = (self >> 32 & 0x00000000FFFFFFFF00000000FFFFFFFF)
| ________________^
248 | | | (self & 0x00000000FFFFFFFF00000000FFFFFFFF) << 32;
| |_______________________________________________________________^ help: consider parenthesizing your expression: `(self >> 32 & 0x00000000FFFFFFFF00000000FFFFFFFF) | ((self & 0x00000000FFFFFFFF00000000FFFFFFFF) << 32)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L245
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:245:17
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245 | self = (self >> 16 & 0x0000FFFF0000FFFF0000FFFF0000FFFF)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 16) & 0x0000FFFF0000FFFF0000FFFF0000FFFF`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L245
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:245:16
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245 | self = (self >> 16 & 0x0000FFFF0000FFFF0000FFFF0000FFFF)
| ________________^
246 | | | (self & 0x0000FFFF0000FFFF0000FFFF0000FFFF) << 16;
| |_______________________________________________________________^ help: consider parenthesizing your expression: `(self >> 16 & 0x0000FFFF0000FFFF0000FFFF0000FFFF) | ((self & 0x0000FFFF0000FFFF0000FFFF0000FFFF) << 16)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L243
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:243:17
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243 | self = (self >> 8 & 0x00FF00FF00FF00FF00FF00FF00FF00FF)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 8) & 0x00FF00FF00FF00FF00FF00FF00FF00FF`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L243
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:243:16
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243 | self = (self >> 8 & 0x00FF00FF00FF00FF00FF00FF00FF00FF)
| ________________^
244 | | | (self & 0x00FF00FF00FF00FF00FF00FF00FF00FF) << 8;
| |______________________________________________________________^ help: consider parenthesizing your expression: `(self >> 8 & 0x00FF00FF00FF00FF00FF00FF00FF00FF) | ((self & 0x00FF00FF00FF00FF00FF00FF00FF00FF) << 8)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L241
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:241:17
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241 | self = (self >> 4 & 0x0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 4) & 0x0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L241
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:241:16
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241 | self = (self >> 4 & 0x0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F)
| ________________^
242 | | | (self & 0x0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F) << 4;
| |______________________________________________________________^ help: consider parenthesizing your expression: `(self >> 4 & 0x0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F) | ((self & 0x0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F0F) << 4)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L239
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:239:17
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239 | self = (self >> 2 & 0x33333333333333333333333333333333)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 2) & 0x33333333333333333333333333333333`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L239
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:239:16
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239 | self = (self >> 2 & 0x33333333333333333333333333333333)
| ________________^
240 | | | (self & 0x33333333333333333333333333333333) << 2;
| |______________________________________________________________^ help: consider parenthesizing your expression: `(self >> 2 & 0x33333333333333333333333333333333) | ((self & 0x33333333333333333333333333333333) << 2)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L185
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:185:17
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185 | self = (self >> 32 & 0x00000000FFFFFFFF) | (self & 0x00000000FFFFFFFF) << 32;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 32) & 0x00000000FFFFFFFF`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L185
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:185:16
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185 | self = (self >> 32 & 0x00000000FFFFFFFF) | (self & 0x00000000FFFFFFFF) << 32;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 32 & 0x00000000FFFFFFFF) | ((self & 0x00000000FFFFFFFF) << 32)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L184
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:184:17
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184 | self = (self >> 16 & 0x0000FFFF0000FFFF) | (self & 0x0000FFFF0000FFFF) << 16;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 16) & 0x0000FFFF0000FFFF`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L184
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:184:16
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184 | self = (self >> 16 & 0x0000FFFF0000FFFF) | (self & 0x0000FFFF0000FFFF) << 16;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 16 & 0x0000FFFF0000FFFF) | ((self & 0x0000FFFF0000FFFF) << 16)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L183
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:183:17
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183 | self = (self >> 8 & 0x00FF00FF00FF00FF) | (self & 0x00FF00FF00FF00FF) << 8;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 8) & 0x00FF00FF00FF00FF`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L183
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:183:16
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183 | self = (self >> 8 & 0x00FF00FF00FF00FF) | (self & 0x00FF00FF00FF00FF) << 8;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 8 & 0x00FF00FF00FF00FF) | ((self & 0x00FF00FF00FF00FF) << 8)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L182
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:182:17
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182 | self = (self >> 4 & 0x0F0F0F0F0F0F0F0F) | (self & 0x0F0F0F0F0F0F0F0F) << 4;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 4) & 0x0F0F0F0F0F0F0F0F`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L182
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:182:16
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182 | self = (self >> 4 & 0x0F0F0F0F0F0F0F0F) | (self & 0x0F0F0F0F0F0F0F0F) << 4;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 4 & 0x0F0F0F0F0F0F0F0F) | ((self & 0x0F0F0F0F0F0F0F0F) << 4)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L181
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:181:17
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181 | self = (self >> 2 & 0x3333333333333333) | (self & 0x3333333333333333) << 2;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 2) & 0x3333333333333333`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/bit_encoding.rs#L181
warning: operator precedence might not be obvious
--> src/ska_dict/bit_encoding.rs:181:16
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181 | self = (self >> 2 & 0x3333333333333333) | (self & 0x3333333333333333) << 2;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: consider parenthesizing your expression: `(self >> 2 & 0x3333333333333333) | ((self & 0x3333333333333333) << 2)`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/split_kmer.rs#L210
warning: operator precedence might not be obvious
--> src/ska_dict/split_kmer.rs:210:34
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210 | self.rc_upper = (self.rc_upper >> 2
| __________________________________^
211 | | | (IntT::from_encoded_base(rc_base(new_base))) << (2 * ((half_k * 2) - 1)))
| |______________________________________________________________________________________________^ help: consider parenthesizing your expression: `(self.rc_upper >> 2) | ((IntT::from_encoded_base(rc_base(new_base))) << (2 * ((half_k * 2) - 1)))`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/split_kmer.rs#L206
warning: operator precedence might not be obvious
--> src/ska_dict/split_kmer.rs:206:34
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206 | self.rc_lower = (self.rc_lower >> 2
| __________________________________^
207 | | | ((IntT::from_encoded_base(self.rc_middle_base)) << (2 * (half_k - 1))))
| |____________________________________________________________________________________________^ help: consider parenthesizing your expression: `(self.rc_lower >> 2) | ((IntT::from_encoded_base(self.rc_middle_base)) << (2 * (half_k - 1)))`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
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operator precedence might not be obvious:
src/ska_dict/split_kmer.rs#L199
warning: operator precedence might not be obvious
--> src/ska_dict/split_kmer.rs:199:27
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199 | self.upper = (self.upper << 2
| ___________________________^
200 | | | (IntT::from_encoded_base(self.middle_base) << (half_k * 2)))
| |_____________________________________________________________________________^ help: consider parenthesizing your expression: `(self.upper << 2) | (IntT::from_encoded_base(self.middle_base) << (half_k * 2))`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#precedence
= note: `#[warn(clippy::precedence)]` on by default
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clippy_check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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clippy_check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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clippy_check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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clippy_check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|