| Script | Description |
|---|---|
| Accession.py | Used to obtain NCBI accession numbers from a PlasmidSeeker output txt file |
| NCBI_IDs_from_BLAST.py | Used to obtain all NCBI accession number hits from an unformated BLAST out file |
| PullContig.py | Python script to pull a specified contig or all the contigs from an assembly that are not the main chromosomal contig |
| IsolateContigs.py | The 'all' section of PullContig.py. Used in the HybridAssembly workflow |
| circular_seq_plot.py | Plots assemblies in circular format with annotations using pyCirclize package, includes annotations |
| sequence_alignment_plot.py | Plots alignments between assemblies using pyGenomeViz package, includes annotations |
Sequence_alignment_plot.py Output:
Circular_seq_plot.py Output:
