Merge pull request #26 from johandahlberg/iseq_support

WIP: Adding support for the ISeq 100
arteria-project · Sep 6, 2018 · 4d52ce2 · 4d52ce2
2 parents 9364c74 + 54ae2e1
commit 4d52ce2
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Showing 2 changed files with 12 additions and 9 deletions.
diff --git a/bcl2fastq/lib/bcl2fastq_utils.py b/bcl2fastq/lib/bcl2fastq_utils.py
@@ -136,7 +136,8 @@ def get_bcl2fastq_version_from_run_parameters(runfolder, config):
                                  "ST": "HiSeq X",
                                  "A": "NovaSeq",
                                  "NS": "NextSeq 500",
-                                 "K": "HiSeq 4000"}
+                                 "K": "HiSeq 4000",
+                                 "FFSP": "ISeq 100"}
 
         for key, value in machine_type_mappings.items():
             if instrument_name.startswith(key):

diff --git a/config/app.config b/config/app.config
@@ -5,7 +5,7 @@
 # TODO Ensure all these mappings are correctly setup.
 bcl2fastq:
   versions:
-    2.17.1:
+    2.20.0:
       binary: bcl2fastq
       class_creation_function:  _get_bcl2fastq2x_runner
     2.16.0.10:
@@ -17,19 +17,21 @@ bcl2fastq:
 
 machine_type:
   HiSeq X:
-    bcl2fastq_version: 2.17.1
+    bcl2fastq_version: 2.20.0
   HiSeq 2500:
-    bcl2fastq_version: 2.17.1
+    bcl2fastq_version: 2.20.0
   HiSeq 2000:
-    bcl2fastq_version: 2.17.1
+    bcl2fastq_version: 2.20.0
   NextSeq 500:
-    bcl2fastq_version: 2.17.1
+    bcl2fastq_version: 2.20.0
   HiSeq 4000:
-    bcl2fastq_version: 2.17.1
+    bcl2fastq_version: 2.20.0
   MiSeq:
-    bcl2fastq_version: 2.17.1
+    bcl2fastq_version: 2.20.0
   NovaSeq:
-    bcl2fastq_version: 2.17.1
+    bcl2fastq_version: 2.20.0
+  ISeq 100:
+    bcl2fastq_version: 2.20.0
 
 
 runfolder_path: /vagrant/tiny-test-data/