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[SPARK-32247][INFRA] Install and test scipy with PyPy in GitHub Actions #30054

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@HyukjinKwon HyukjinKwon commented Oct 15, 2020

What changes were proposed in this pull request?

This PR proposes to install scipy as well in PyPy. It will test several ML specific test cases in PyPy as well. For example,

@unittest.skipIf(not have_scipy, "SciPy not installed")

It was not installed when GitHub Actions build was added because it failed to install for an unknown reason. Seems like it's fixed in the latest scipy.

Why are the changes needed?

To improve test coverage.

Does this PR introduce any user-facing change?

No, dev-only.

How was this patch tested?

GitHub Actions build in this PR will test it out.

@HyukjinKwon HyukjinKwon marked this pull request as draft October 15, 2020 10:48
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SparkQA commented Oct 15, 2020

Kubernetes integration test starting
URL: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/34438/

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SparkQA commented Oct 15, 2020

Kubernetes integration test status success
URL: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/34438/

@HyukjinKwon HyukjinKwon marked this pull request as ready for review October 15, 2020 12:33
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@dongjoon-hyun, would you mind taking a look please?

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SparkQA commented Oct 15, 2020

Test build #129833 has finished for PR 30054 at commit b505917.

  • This patch passes all tests.
  • This patch merges cleanly.
  • This patch adds no public classes.

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+1, LGTM. Thank you, @HyukjinKwon .
Merged to master.

HyukjinKwon added a commit that referenced this pull request Oct 22, 2020
### What changes were proposed in this pull request?

This PR proposes to install `scipy` as well in PyPy. It will test several ML specific test cases in PyPy as well. For example, https://github.com/apache/spark/blob/31a16fbb405a19dc3eb732347e0e1f873b16971d/python/pyspark/mllib/tests/test_linalg.py#L487

It was not installed when GitHub Actions build was added because it failed to install for an unknown reason. Seems like it's fixed in the latest scipy.

### Why are the changes needed?

To improve test coverage.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

GitHub Actions build in this PR will test it out.

Closes #30054 from HyukjinKwon/SPARK-32247.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
HyukjinKwon added a commit that referenced this pull request Oct 22, 2020
### What changes were proposed in this pull request?

This PR proposes to install `scipy` as well in PyPy. It will test several ML specific test cases in PyPy as well. For example, https://github.com/apache/spark/blob/31a16fbb405a19dc3eb732347e0e1f873b16971d/python/pyspark/mllib/tests/test_linalg.py#L487

It was not installed when GitHub Actions build was added because it failed to install for an unknown reason. Seems like it's fixed in the latest scipy.

### Why are the changes needed?

To improve test coverage.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

GitHub Actions build in this PR will test it out.

Closes #30054 from HyukjinKwon/SPARK-32247.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
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I also back ported this to branch-3.0 and branch-2.4.

holdenk pushed a commit to holdenk/spark that referenced this pull request Oct 27, 2020
### What changes were proposed in this pull request?

This PR proposes to install `scipy` as well in PyPy. It will test several ML specific test cases in PyPy as well. For example, https://github.com/apache/spark/blob/31a16fbb405a19dc3eb732347e0e1f873b16971d/python/pyspark/mllib/tests/test_linalg.py#L487

It was not installed when GitHub Actions build was added because it failed to install for an unknown reason. Seems like it's fixed in the latest scipy.

### Why are the changes needed?

To improve test coverage.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

GitHub Actions build in this PR will test it out.

Closes apache#30054 from HyukjinKwon/SPARK-32247.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
@HyukjinKwon HyukjinKwon deleted the SPARK-32247 branch December 7, 2020 02:07
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3 participants