Code to genomes

This is a crash-course in bioinformatics for the analysis of Oxford Nanopore Technology Sequencing Data, specifically viral RNA.

What you will learn:

• Basics of Linux
• Terminology of high throughput sequencing and bioinformatics
• Typical viral RNA ONT workflow
• Custom build
• Containerised options
• How to build and annotate a phylogenetic tree
• How to perform most sequnecing analysis in R statistics

What you need before the course:

• A GitHub account

• Access to the UCD Sonic HPC
• VSCode or a similar platform for ssh tunnelling
• WinSCP or FileZilla for easy file transfer
• A positive attitude and sweet treats to get you through yet another conda install