Merge pull request #7 from aertslab/update_polars_groupby_syntax

Update polars groupby syntax
aertslab · Jul 8, 2024 · 27b3a05 · 27b3a05
2 parents 6c1b626 + 5365d4c
commit 27b3a05
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/rust/Cargo.toml b/rust/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "_rust_scatac_fragment_tools"
-version = "0.1.1"
+version = "0.1.2"
 authors = ["Seppe De Winter <seppe.dewinter@kuleuven.be>", "Gert Hulselmans <gert.hulselmans@kuleuven.be>"]
 edition = "2021"
 

diff --git a/src/scatac_fragment_tools/cli/commands.py b/src/scatac_fragment_tools/cli/commands.py
@@ -143,7 +143,7 @@ def command_split_fragments_by_cell_type(args):
     d_cell_type_to_cell_barcode_definition = pl.scan_csv(
         args.path_to_cell_type_to_cell_barcode_definition,
         separator=args.separator) \
-        .groupby([args.sample_column_name, args.cell_type_column_name]) \
+        .group_by([args.sample_column_name, args.cell_type_column_name]) \
         .agg(pl.col(args.cell_barcode_column_name)) \
         .collect() \
         .to_dict()

diff --git a/src/scatac_fragment_tools/library/bigwig/fragments_to_bigwig.py b/src/scatac_fragment_tools/library/bigwig/fragments_to_bigwig.py
@@ -232,7 +232,7 @@ def read_fragments_to_polars_df(
         "Score" not in fragments_df_pl.columns
         or fragments_df_pl.schema["Score"] == pl.Utf8
     ):
-        fragments_df_pl = fragments_df_pl.groupby(
+        fragments_df_pl = fragments_df_pl.group_by(
             ["Chromosome", "Start", "End", "Name"]
         ).agg(pl.len().cast(pl.Int32()).alias("Score"))
     else: