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get update #1

Merged
merged 554 commits into from
Feb 21, 2021
Merged

get update #1

merged 554 commits into from
Feb 21, 2021

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a3sha2
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@a3sha2 a3sha2 commented Feb 21, 2021

Summary

Fixes # .

List of changes proposed in this PR (pull-request)

Acknowledgment

  • (Mandatory) I acknowledge that this contribution will be available under the Apache 2 license.

AnnaD15 and others added 30 commits February 14, 2020 11:50
Co-Authored-By: Chris Markiewicz <effigies@gmail.com>
Co-Authored-By: Chris Markiewicz <effigies@gmail.com>
ENH: Remove examples from repository
small edits, the removed link didn't work anyway [skip CI]
[DOC] Update SelectFiles docstring to match actual behavior
GalKepler and others added 29 commits October 26, 2020 11:59
Co-authored-by: Chris Markiewicz <effigies@gmail.com>
…seg' output exists in case 'wmseg' input is already provided
[FIX] EpiReg changed to not list certain outputs when 'wmseg' input is specified
FIX: Handle changes in CLI structure of mrtrix3.DWIBiasCorrect
DOC: Remove myself (@mr-c) from the zenodo metadata
Potential hack for #3138
handle unavailable traits due to version differences
FIX: Purge deprecated exception content accesses
FIX: Canonicalize environment dicts to strings in Windows
* added mrtrix3 dwifslpreproc as interface

* use defaults added for outputs

* Added dwifslpreproc interface to __init__

* edited doc string to correct order

* added doctest skip

* added MRtrix3 gradient empty test data

* specified positions, requires for gradient exports

* finalized docstring example and pytest

* added entry to contribution list

* simplify phase-encoding design input

Moved `-rpe_` to `argstr` for simpler input.

Co-authored-by: Chris Markiewicz <effigies@gmail.com>

* Apply suggestions from code review

Fixed typos and improved `-eddy` and `-topup` optional inputs.

Co-authored-by: Chris Markiewicz <effigies@gmail.com>

* Update nipype/interfaces/mrtrix3/preprocess.py

Co-authored-by: Xihe Xie <axiezai@gmail.com>

* fixed input positions according to review

* fixed doc string for new positions

Co-authored-by: Chris Markiewicz <effigies@gmail.com>
@a3sha2 a3sha2 merged commit 484fcc9 into a3sha2:master Feb 21, 2021
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