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Thops466 ercc#39

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e-t-k merged 20 commits intomasterUCSC-Treehouse/pipelines:masterfrom thops466_erccUCSC-Treehouse/pipelines:thops466_erccCopy head branch name to clipboardNov 15, 2022

+341-69

Commits

Commits on Oct 17, 2022

• add ercc thops#466 - reference section

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• add troubleshooting for 'Needed to prompt...

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• update treeshop.md with new pipelines

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• fix makefile expression message

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• improve R1/R2 detection in Makefile (#18)

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Commits on Oct 19, 2022

• ERCC - expression step (untested)

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• ERCC - qc step (untested)

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• ercc fabfile bugfix

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Commits on Oct 21, 2022

• ERCC - remaining steps (UNTESTED)

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• single whitespace typo

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• removed grep -v -- not working.

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Commits on Oct 22, 2022

• bugfixes in fabfile.py for ERCC

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• makefile bugfixes for ERCCC untested

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Commits on Oct 23, 2022

• ercc - bugfix

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Commits on Oct 24, 2022

• Fix fusion potential hang

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Commits on Oct 26, 2022

• tested on ERCC path but not non-ERCC path

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Commits on Oct 27, 2022

• Create ercc.md

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Commits on Oct 28, 2022

• Update treeshop.md

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• Update README.md

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Commits on Nov 15, 2022

• suppress toil debug output from expression

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