Updates for the joss review

TeaspoonTDA · Jan 8, 2025 · 4281971 · 4281971
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commit 4281971
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Showing 4 changed files with 74 additions and 12 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -2,7 +2,7 @@
 
 [project]
 name = "teaspoon"
-version = "1.5.21"
+version = "1.5.22"
 authors = [
   { name="Elizabeth Munch", email="muncheli@msu.edu" },
   { name="Firas Khasawneh", email="khasawn3@msu.edu" },

diff --git a/requirements.txt b/requirements.txt
@@ -0,0 +1,72 @@
+pip
+absl-py
+astunparse
+certifi
+charset-normalizer
+contourpy
+cycler>=0.11.0
+Cython
+ddeint
+Deprecated
+eagerpy
+flatbuffers
+fonttools>=4.34.4
+gast
+google-pasta
+grpcio
+gudhi>=3.10.1
+h5py
+hopcroftkarp
+idna
+importlib_resources
+joblib
+keras
+kiwisolver
+libclang
+llvmlite
+Markdown
+markdown-it-py
+MarkupSafe
+matplotlib>=3.5.2
+mdurl
+ml-dtypes
+mpmath
+namex
+networkx>=3.1
+numba
+numpy
+opt_einsum
+optree
+packaging
+pandas>=1.4.1
+persim
+pillow
+platformdirs
+pooch
+POT>=0.8.2
+protobuf
+pyentrp
+Pygments
+pyparsing
+python-dateutil
+pytz
+requests
+rich
+ripser>=0.6.4
+scikit-learn>=1.1.1
+scipy>=1.8.1
+six>=1.16.0
+sortedcontainers
+sympy
+teaspoon>=1.4
+tensorboard
+tensorboard-data-server
+tensorflow
+tensorflow-io-gcs-filesystem
+termcolor
+threadpoolctl
+typing_extensions
+tzdata
+urllib3
+Werkzeug
+wrapt
diff --git a/teaspoon/teaspoon/TDA/Distance.py b/teaspoon/teaspoon/TDA/Distance.py
@@ -78,7 +78,7 @@ def wassersteinDist(
 
     # Get distances between all pairs of off-diagonal points
     # When we fix this for more q options,
-    if q == np.infty:
+    if q == np.inf:
         metric = 'chebyshev'
     elif q == 1:
         metric = 'l1'

diff --git a/teaspoon/teaspoon/TDA/c_profile_test.py b/teaspoon/teaspoon/TDA/c_profile_test.py