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1. NADCs_meta NADCs_meta Public

   A meta analysis estimating the incidence and mortality of non-AIDS-defining cancer in people living with HIV

   R 4 1

2. Deepsurv_SHAP Deepsurv_SHAP Public

   This project first used Deepsurv to train a deep learning model based on epigenome-wide DNA methylaiton data, and then use SHAP to rank the importance of input features.

   Python 4

3. CpGs-validation CpGs-validation Public

   This is an external validation project aiming at validating all CpGs significantly associated with prognosis and prognostic models based on CpGs reported in existing literature.

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4. HIV-prognostic-model-development-and-validation HIV-prognostic-model-development-and-validation Public

   R code to develop and validate prognostic model for people living with HIV

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5. multimodal_deepsurv multimodal_deepsurv Public

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6. DNA_methylation_panel_identification DNA_methylation_panel_identification Public

   This project tried different machine learning methods to identify DNA methylation markers capable of improving the prediction of prognosis among patients with colorectal cancer.

   Jupyter Notebook 1