v3.1.1

What's Changed

• Added CI profile and update conda profile by @LKress in #17

New Contributors

• @LKress made their first contribution in #17

Full Changelog: v3.1.0...v3.1.1

v3.1.0

What's Changed

• bump vafator version to v2.2.0 by @priesgo in #14

Full Changelog: v3.0.0...v3.1.0

v3.0.0

Changes

• Introduce WhatsHap for phasing of diploid genotyped VCFs

Bugfix

• Fix BCFtools csq annotation

v2.5.0

Changes

• Bump VAFator version to v2.1.0

Release v2.4.1

Changes

• Add parameter --snpeff_memory to avoid OutOfMemory error in SnpEfff for some samples

Release v2.4.0

Changes

• Add BCFtools csq to perform functional annotations
• Upgrade VAFator to 2.0.3

Release v2.3.1

Bugfix

• Version 2.0.1 of vafator has a bug when providing replicates, upgrading to 2.0.2 fixes it

Release v2.3.0

Changes

• Upgrade VAFator to 2.0.1
• Include support for all the new parameters related to power to detect a mutation calculation in VAFator

Release v2.2.1

Changes

• Upgrade bcftools to 1.15.1
• This seems to solve an issue with libcrypto.so dependency

Release v2.2.0

Changes

• Make normalization optional
• Upgrade to VAFator 1.2.5

NOTE: this release intends to replace the nextflow workflow in the VAFator package