Skip to content

Commit

Permalink
Merge pull request #882 from SysBioChalmers/feat/macaw_output
Browse files Browse the repository at this point in the history
feat: store summary macaw results
  • Loading branch information
feiranl authored Nov 5, 2024
2 parents 19af535 + 25dbea8 commit f2320fd
Show file tree
Hide file tree
Showing 3 changed files with 8 additions and 8 deletions.
7 changes: 7 additions & 0 deletions .github/workflows/commentMacaw.md
Original file line number Diff line number Diff line change
@@ -1,9 +1,16 @@
<<<<<<<< HEAD:.github/workflows/commentMacaw.md
This PR has been [automatically tested with GH Actions](https://github.com/SysBioChalmers/Human-GEM/actions/runs/{GH_ACTION_RUN}). Here is the output of the [MACAW](https://github.com/Devlin-Moyer/macaw) test:
========
This PR has been [automatically tested with GH Actions](https://github.com/SysBioChalmers/Human-GEM/actions/runs/{GH_ACTION_RUN}). Here is the output of the gene essentiality test:
>>>>>>>> develop:.github/workflows/commentsFromTests.md
<pre>
{TEST_RESULTS}
</pre>

<<<<<<<< HEAD:.github/workflows/commentMacaw.md
This and a more detailed output from MACAW are also committed to `data/macawResults/`.

========
>>>>>>>> develop:.github/workflows/commentsFromTests.md
> _Note: In the case of multiple test runs, this post will be edited._
7 changes: 0 additions & 7 deletions .github/workflows/commentsFromTests.md

This file was deleted.

2 changes: 1 addition & 1 deletion data/testResults/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/macaw) `dead_end_test` and `duplicate_test` tests, and from cell-line specific gene essentiality prediction based on the [Hart _et al._ (2015)](https://doi.org/10.1016/j.cell.2015.11.015) dataset.

The test results shown here were obtained by the GitHub Actions run in **PR #675** (MACAW) and **PR #675** (gene essentiality), and will be updated by any subsequent PR. Summary results are shown as a comment in the corresponding PR.
The test results shown here were obtained by the GitHub Actions run in **PR #882** (MACAW) and **PR #675** (gene essentiality), and will be updated by any subsequent PR. Summary results are shown as a comment in the corresponding PR.

### MACAW: `dead_end_test`
Looks for metabolites in Human-GEM that can only be produced by all reactions they participate in or only consumed, then identifies all reactions that are prevented from sustaining steady-state fluxes because of each of these dead-end metabolites. The simplest case of a dead-end metabolite is one that only participates in a single reaction. Also flags all reversible reactions that can only carry fluxes in a single direction because one of their metabolites can either only be consumed or only be produced by all other reactions it participates in.
Expand Down

0 comments on commit f2320fd

Please sign in to comment.