fix: use readYAMLmodel and writeYAMLmodel (#942)

* fix: use readYAMLmodel and writeYAMLmodel in funcs * fix: remove unnecessary functions * chore: add macaw test result --------- Co-authored-by: edkerk <edkerk@users.noreply.github.com>
SysBioChalmers · Dec 23, 2024 · 5e7c68c · 5e7c68c
1 parent 1a562ce
commit 5e7c68c
Show file tree

Hide file tree

Showing 11 changed files with 13 additions and 1,070 deletions.
diff --git a/code/DepMapGeneEss/PrepDepMapData.m b/code/DepMapGeneEss/PrepDepMapData.m
@@ -37,7 +37,7 @@
 save('data/arrayDataDepMap.mat','arrayDataDepMap');
 
 %Generate ftINIT prepData - only needs to be done once. Can take up to an hour to run
-model = importYaml('../../model/Human-GEM.yml');
+model = readYAMLmodel('../../model/Human-GEM.yml');
 [model.grRules, skipped] = simplifyGrRules(model.grRules, true);%takes a few minutes to run
 prepData = prepHumanModelForftINIT(model, true, '../../data/metabolicTasks/metabolicTasks_Essential.txt', '../../model/reactions.tsv');
 save('data/prepDataGeneSymbols.mat', 'prepData')