Skip to content

1.5.1
Compare
Choose a tag to compare
@cjmyers cjmyers released this 17 Jun 15:46
· 1216 commits to master since this release
1.5.1
d9be6e3
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

SynBioHub is a design repository for people designing biological constructs. It enables DNA and protein designs to be uploaded and shared. SynBioHub also facilitates searching for information about existing useful parts and designs by combining data from a variety of sources. Finally, it has a programmatic interface that allows applications to connect to SynBioHub via a RESTful API to enable third-party software to search, fetch, and submit parts and other design information.

The easiest install method is using Docker, instructions here:

http://wiki.synbiohub.org/wiki/Installation

It is also possible to run on Mac and Linux systems without using Docker. Instructions can be found on the repository README here:

https://github.com/SynBioHub/synbiohub

If you have an instance of SynBioHub running on your machine and would like to make it publicly accessible using the web, we recommend using nginx. Instructions for deploying on nginx can be found here:

http://wiki.synbiohub.org/wiki/NGINX_configuration_instructions

Finally, if you do create a publically accessible instance of SynBioHub, we would like to hear from you, so we may add it to our web-of-registries. Please email:

synbiohub-dev@googlegroups.com

New Features

  • Show all attachment image types
  • Ability to edit name
  • Ability to edit description
  • Ability to add/edit/delete roles and types
  • Added support to add attachments that refer to a URL

Changes

  • Remove old sbh:topLevel tags on submission
  • Send URL of requester to plugins
  • Added SPARQL endpoint to documentation
  • Allow rendering of objects with links to objects of incorrect type
  • Updating logging to have different log levels and to cycle logs

Bug fixes

  • Fixed bug with GenBank export losing names
  • Fixed broken link in password reset email
  • Fixed submit and thus SBH for Java versions > 8
  • Fixed backups for docker images
Assets 2
Loading