Updated nci-parallel path

Sydney-Informatics-Hub · Sep 6, 2021 · 906045d · 906045d
1 parent e3d1f2c
commit 906045d
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/fastqc_run_parallel.pbs b/fastqc_run_parallel.pbs
@@ -29,7 +29,7 @@
 #PBS -l wd
 #PBS -q normalbw
 #PBS -W umask=022
-#PBS -l storage=scratch/public+
+#PBS -l storage=
 #PBS -o ./Logs/fastqc.o
 #PBS -e ./Logs/fastqc.e
 
@@ -46,6 +46,7 @@ PBS_NCI_NCPUS_PER_NODE=$PBS_NCPUS
 # Do not edit below this line
 #########################################################
 
+module load nci-parallel/1.0.0a
 module load openmpi/4.1.0
 module load fastqc/0.11.7
 
@@ -58,6 +59,6 @@ sed "s|^|${SCRIPT} |" ${INPUTS} > ${PBS_JOBFS}/input-file
 
 mpirun --np $((M * PBS_NCPUS / PBS_NCI_NCPUS_PER_NODE)) \
         --map-by node:PE=${NCPUS} \
-        /scratch/public/bjm900/nci-parallel/bin/nci-parallel \
+        nci-parallel \
         --verbose \
         --input-file ${PBS_JOBFS}/input-file