Updated repo tools

.Rbuildignore

@@ -1,20 +1,20 @@
-^\.DS_Store$
 ^\.Rproj\.user$
 ^.+\.Rproj$
 ^\.gitignore$
 ^\.git$
 ^\.github$
+^\.DS_Store$
 ^Makefile$
 ^\.Rprofile$
 ^revdep$
 ^codecov\.yml$
+^_pkgdown\.yml$
+^pkgdown$
+^docs$
 ^CODE_OF_CONDUCT\.md$
 ^FAQ\.md$
 ^LICENSE\.md$
 ^README\.Rmd$
-^README\.Rmd$
+^README\.md$
 ^TODO\.md$
-^_pkgdown\.yml$
-^pkgdown$
-^docs$
 data-raw

.github/workflows/test-coverage.yaml

@@ -13,6 +13,7 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
     steps:
       - uses: actions/checkout@v4
@@ -28,10 +29,12 @@ jobs:
 
       - name: Test coverage
         run: |
+          token <- Sys.getenv("CODECOV_TOKEN", "")
           covr::codecov(
             quiet = FALSE,
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"),
+            token = if (token != "") token
           )
         shell: Rscript {0}
 

.gitignore

@@ -55,3 +55,4 @@ rsconnect/
 # More files
 inst/doc
 docs
+Meta

DESCRIPTION

@@ -9,44 +9,44 @@ Authors@R: c(person("Philippe", "Grosjean", role = c("aut", "cre"),
   email = "phgrosjean@sciviews.org",
   comment = c(ORCID = "0000-0002-2694-9471")))
 Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
-Depends: R (>= 4.2.0)
+Depends:
+    R (>= 4.2.0)
 Imports:
-    tibble,
-    tsibble,
-    Hmisc,
-    utils,
-    readr,
-    rlang,
-    svBase,
-    lifecycle
+    Hmisc (>= 5.0.1),
+    lifecycle (>= 1.0.3),
+    utils (>= 4.2.0),
+    readr (>= 2.1.4),
+    rlang (>= 1.1.1),
+    svBase (>= 1.4.0),
+    tibble (>= 3.2.1),
+    tsibble (>= 1.1.3)
 Suggests: 
-    SciViews,
-    readxl,
-    haven,
-    WriteXLS,
-    writexl,
-    datasets,
-    ggplot2,
-    lme4,
-    babynames,
-    nycflights13,
-    palmerpenguins,
-    covr,
-    knitr,
-    rmarkdown,
-    testthat (>= 3.0.0),
-    spelling
+    babynames (>= 1.0.1),
+    datasets (>= 4.2.0),
+    ggplot2 (>= 3.4.2),
+    haven (>= 2.5.2),
+    lme4 (>= 1.1.32),
+    nycflights13 (>= 1.0.2),
+    palmerpenguins (>= 0.1.1),
+    SciViews (>= 1.6.0),
+    readxl (>= 1.4.2),
+    writexl (>= 1.4.2),
+    WriteXLS (>= 6.4.0),
+    knitr (>= 1.42),
+    rmarkdown (>= 2.21),
+    spelling (>= 2.2.1),
+    testthat (>= 3.0.0)
 Remotes: 
-    SciViews/svBase,
-    SciViews/SciViews
+    SciViews/SciViews,
+    SciViews/svBase
 License:  MIT + file LICENSE
 URL: https://github.com/SciViews/data.io, https://www.sciviews.org/data.io/
 BugReports: https://github.com/SciViews/data.io/issues
-LazyData: yes
-ByteCompile: yes
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.2.3
-Config/testthat/edition: 3
 VignetteBuilder: knitr
 Encoding: UTF-8
 Language: en-US
+LazyData: yes
+ByteCompile: yes
+Config/testthat/edition: 3

README.md

@@ -2,7 +2,7 @@
 
 <!-- badges: start -->
 
-[![R-CMD-check](https://github.com/SciViews/data.io/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/SciViews/data.io/actions/workflows/R-CMD-check.yaml) [![Codecov test coverage](https://codecov.io/gh/SciViews/data.io/branch/main/graph/badge.svg)](https://app.codecov.io/gh/SciViews/data.io?branch=main) [![CRAN Status](https://www.r-pkg.org/badges/version/data.io)](https://cran.r-project.org/package=data.io) [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT) [![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable)
+[![R-CMD-check](https://github.com/SciViews/data.io/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/SciViews/data.io/actions/workflows/R-CMD-check.yaml) [![Codecov test coverage](https://codecov.io/gh/SciViews/data.io/branch/main/graph/badge.svg)](https://app.codecov.io/gh/SciViews/data.io?branch=main) [![CRAN Status](https://www.r-pkg.org/badges/version/data.io)](https://cran.r-project.org/package=data.io) [![r-universe status](https://sciviews.r-universe.dev/badges/data.io)](https://sciviews.r-universe.dev/data.io) [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT) [![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable))
 
 <!-- badges: end -->
 
@@ -51,4 +51,4 @@ For further instructions, please, refer to these help pages at <https://www.sciv
 
 ## Code of Conduct
 
-Please note that the {data.io} project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
+Please note that the {data.io} package is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.

inst/CITATION

@@ -1,18 +1,20 @@
-citHeader("To cite SciViews-R in publications, please use:")
+citHeader("To cite SciViews-R in publications use:")
 
-citEntry(entry="Manual",
-  title = "SciViews-R",
-  author = personList(as.person("Philippe Grosjean")),
+citEntry(
+  entry        = "Manual",
+  title        = "SciViews::R",
+  author       = personList(as.person("Philippe Grosjean"),
+                            as.person("Guyliann Engels")),
   organization = "UMONS",
   address      = "MONS, Belgium",
   year         = version$year,
-  url          = "https://www.sciviews.org/SciViews-R/",
+  url          = "https://sciviews.r-universe.dev/",
 
   textVersion =
-    paste("Grosjean, Ph. (", version$year, "). ",
-      "SciViews-R. ",
+    paste("Grosjean, Ph. & Engels, G. (", version$year, "). ",
+      "SciViews::R. ",
       "UMONS, Mons, Belgium. ",
-      "URL https://www.sciviews.org/SciViews-R/.",
+      "URL https://sciviews.r-universe.dev/.",
       sep = "")
 )
 

vignettes/data-io.Rmd

@@ -1,16 +1,16 @@
 ---
-title: "SciViews datasets and read()/write() functions"
-author: "Philippe Grosjean (phgrosjean@sciviews.org)"
+title: "Read and Write Data in Different Formats"
+author: "Philippe Grosjean"
 date: "`r Sys.Date()`"
 output:
   rmarkdown::html_vignette:
     toc: true
     toc_depth: 3
+    fig_caption: yes
 vignette: >
-  %\VignetteIndexEntry{SciViews datasets and read()/write() functions}
+  %\VignetteIndexEntry{Read and Write Data in Different Formats}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
-  \usepackage[utf8]{inputenc}
 ---
 
 ```{r setup, include=FALSE}