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SciCompMod · Nov 29, 2024 · b6ed0be · b6ed0be
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diff --git a/coverage/cpp/index-sort-f.html b/coverage/cpp/index-sort-f.html
@@ -31,13 +31,13 @@
             <td class="headerValue">coverage.info</td>
             <td></td>
             <td class="headerItem">Lines:</td>
-            <td class="headerCovTableEntry">11515</td>
+            <td class="headerCovTableEntry">11513</td>
             <td class="headerCovTableEntry">11873</td>
             <td class="headerCovTableEntryHi">97.0 %</td>
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-11-28 16:36:30</td>
+            <td class="headerValue">2024-11-29 10:36:44</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">9729</td>
@@ -182,10 +182,10 @@
     <tr>
       <td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="98.3%"><img src="snow.png" width=2 height=10 alt="98.3%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="98.2%"><img src="snow.png" width=2 height=10 alt="98.2%"></td></tr></table>
       </td>
-      <td class="coverPerHi">98.3&nbsp;%</td>
-      <td class="coverNumHi">1720 / 1749</td>
+      <td class="coverPerHi">98.2&nbsp;%</td>
+      <td class="coverNumHi">1718 / 1749</td>
       <td class="coverPerHi">98.1&nbsp;%</td>
       <td class="coverNumHi">460 / 469</td>
     </tr>

diff --git a/coverage/cpp/index-sort-l.html b/coverage/cpp/index-sort-l.html
@@ -31,13 +31,13 @@
             <td class="headerValue">coverage.info</td>
             <td></td>
             <td class="headerItem">Lines:</td>
-            <td class="headerCovTableEntry">11515</td>
+            <td class="headerCovTableEntry">11513</td>
             <td class="headerCovTableEntry">11873</td>
             <td class="headerCovTableEntryHi">97.0 %</td>
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-11-28 16:36:30</td>
+            <td class="headerValue">2024-11-29 10:36:44</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">9729</td>
@@ -172,10 +172,10 @@
     <tr>
       <td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="98.3%"><img src="snow.png" width=2 height=10 alt="98.3%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="98.2%"><img src="snow.png" width=2 height=10 alt="98.2%"></td></tr></table>
       </td>
-      <td class="coverPerHi">98.3&nbsp;%</td>
-      <td class="coverNumHi">1720 / 1749</td>
+      <td class="coverPerHi">98.2&nbsp;%</td>
+      <td class="coverNumHi">1718 / 1749</td>
       <td class="coverPerHi">98.1&nbsp;%</td>
       <td class="coverNumHi">460 / 469</td>
     </tr>

diff --git a/coverage/cpp/index.html b/coverage/cpp/index.html
@@ -31,13 +31,13 @@
             <td class="headerValue">coverage.info</td>
             <td></td>
             <td class="headerItem">Lines:</td>
-            <td class="headerCovTableEntry">11515</td>
+            <td class="headerCovTableEntry">11513</td>
             <td class="headerCovTableEntry">11873</td>
             <td class="headerCovTableEntryHi">97.0 %</td>
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-11-28 16:36:30</td>
+            <td class="headerValue">2024-11-29 10:36:44</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">9729</td>
@@ -162,10 +162,10 @@
     <tr>
       <td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="98.3%"><img src="snow.png" width=2 height=10 alt="98.3%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="98.2%"><img src="snow.png" width=2 height=10 alt="98.2%"></td></tr></table>
       </td>
-      <td class="coverPerHi">98.3&nbsp;%</td>
-      <td class="coverNumHi">1720 / 1749</td>
+      <td class="coverPerHi">98.2&nbsp;%</td>
+      <td class="coverNumHi">1718 / 1749</td>
       <td class="coverPerHi">98.1&nbsp;%</td>
       <td class="coverNumHi">460 / 469</td>
     </tr>

diff --git a/coverage/cpp/memilio/compartments/compartmentalmodel.h.func-sort-c.html b/coverage/cpp/memilio/compartments/compartmentalmodel.h.func-sort-c.html
@@ -37,7 +37,7 @@
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-11-28 16:36:30</td>
+            <td class="headerValue">2024-11-29 10:36:44</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">111</td>
@@ -745,11 +745,11 @@
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::oseir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::oseir::InfectionState&gt;, mio::oseir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">170001</td>
+              <td class="coverFnHi">170109</td>
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::osecir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">393810</td>
+              <td class="coverFnHi">414870</td>
             </tr>
   </table>
   <br>

diff --git a/coverage/cpp/memilio/compartments/compartmentalmodel.h.func.html b/coverage/cpp/memilio/compartments/compartmentalmodel.h.func.html
@@ -37,7 +37,7 @@
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-11-28 16:36:30</td>
+            <td class="headerValue">2024-11-29 10:36:44</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">111</td>
@@ -557,7 +557,7 @@
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::oseir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::oseir::InfectionState&gt;, mio::oseir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">170001</td>
+              <td class="coverFnHi">170109</td>
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;double, mio::oseir::InfectionState, mio::Populations&lt;double, mio::oseir::InfectionState, CatA, CatB, CatC&gt;, mio::oseir::Parameters&lt;double&gt; &gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
@@ -721,7 +721,7 @@
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::osecir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">393810</td>
+              <td class="coverFnHi">414870</td>
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;double, mio::sseirvv::InfectionState, mio::Populations&lt;double, mio::sseirvv::InfectionState&gt;, mio::sseirvv::Parameters&gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>

diff --git a/coverage/cpp/memilio/compartments/compartmentalmodel.h.gcov.html b/coverage/cpp/memilio/compartments/compartmentalmodel.h.gcov.html
@@ -37,7 +37,7 @@
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-11-28 16:36:30</td>
+            <td class="headerValue">2024-11-29 10:36:44</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">111</td>
@@ -180,12 +180,12 @@
 <a name="118"><span class="lineNum">     118 </span>            :      * @param[in] t The current time.</a>
 <a name="119"><span class="lineNum">     119 </span>            :      * @param[out] dydt A reference to the calculated output.</a>
 <a name="120"><span class="lineNum">     120 </span>            :      */</a>
-<a name="121"><span class="lineNum">     121 </span><span class="lineCov">     578907 :     void eval_right_hand_side(Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; pop, Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; y, FP t,</span></a>
+<a name="121"><span class="lineNum">     121 </span><span class="lineCov">     600075 :     void eval_right_hand_side(Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; pop, Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; y, FP t,</span></a>
 <a name="122"><span class="lineNum">     122 </span>            :                               Eigen::Ref&lt;Vector&lt;FP&gt;&gt; dydt) const</a>
 <a name="123"><span class="lineNum">     123 </span>            :     {</a>
-<a name="124"><span class="lineNum">     124 </span><span class="lineCov">     578907 :         dydt.setZero();</span></a>
-<a name="125"><span class="lineNum">     125 </span><span class="lineCov">     578907 :         this-&gt;get_derivatives(pop, y, t, dydt);</span></a>
-<a name="126"><span class="lineNum">     126 </span><span class="lineCov">     578907 :     }</span></a>
+<a name="124"><span class="lineNum">     124 </span><span class="lineCov">     600075 :         dydt.setZero();</span></a>
+<a name="125"><span class="lineNum">     125 </span><span class="lineCov">     600075 :         this-&gt;get_derivatives(pop, y, t, dydt);</span></a>
+<a name="126"><span class="lineNum">     126 </span><span class="lineCov">     600075 :     }</span></a>
 <a name="127"><span class="lineNum">     127 </span>            : </a>
 <a name="128"><span class="lineNum">     128 </span>            :     /**</a>
 <a name="129"><span class="lineNum">     129 </span>            :      * @brief Get the initial conditions for the ODE dydt = f(y, t).</a>