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SciCompMod · Jan 18, 2024 · 6ef9677 · 6ef9677
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diff --git a/coverage/cpp/index-sort-f.html b/coverage/cpp/index-sort-f.html
@@ -31,18 +31,18 @@
             <td class="headerValue">coverage.info</td>
             <td></td>
             <td class="headerItem">Lines:</td>
-            <td class="headerCovTableEntry">9026</td>
-            <td class="headerCovTableEntry">9443</td>
-            <td class="headerCovTableEntryHi">95.6 %</td>
+            <td class="headerCovTableEntry">9028</td>
+            <td class="headerCovTableEntry">9415</td>
+            <td class="headerCovTableEntryHi">95.9 %</td>
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-01-16 15:19:34</td>
+            <td class="headerValue">2024-01-18 16:35:19</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">6378</td>
-            <td class="headerCovTableEntry">7355</td>
-            <td class="headerCovTableEntryMed">86.7 %</td>
+            <td class="headerCovTableEntry">7352</td>
+            <td class="headerCovTableEntryMed">86.8 %</td>
           </tr>
           <tr><td><img src="glass.png" width=3 height=3 alt=""></td></tr>
         </table>
@@ -119,26 +119,6 @@
       <td class="coverPerHi">90.1&nbsp;%</td>
       <td class="coverNumHi">435 / 483</td>
     </tr>
-    <tr>
-      <td class="coverFile"><a href="models/ide_seir/index.html">models/ide_seir</a></td>
-      <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="amber.png" width=82 height=10 alt="82.2%"><img src="snow.png" width=18 height=10 alt="82.2%"></td></tr></table>
-      </td>
-      <td class="coverPerMed">82.2&nbsp;%</td>
-      <td class="coverNumMed">60 / 73</td>
-      <td class="coverPerHi">90.9&nbsp;%</td>
-      <td class="coverNumHi">10 / 11</td>
-    </tr>
-    <tr>
-      <td class="coverFile"><a href="models/ide_secir/index.html">models/ide_secir</a></td>
-      <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="amber.png" width=86 height=10 alt="85.8%"><img src="snow.png" width=14 height=10 alt="85.8%"></td></tr></table>
-      </td>
-      <td class="coverPerMed">85.8&nbsp;%</td>
-      <td class="coverNumMed">273 / 318</td>
-      <td class="coverPerHi">92.3&nbsp;%</td>
-      <td class="coverNumHi">24 / 26</td>
-    </tr>
     <tr>
       <td class="coverFile"><a href="memilio/utils/index.html">memilio/utils</a></td>
       <td class="coverBar" align="center">
@@ -162,10 +142,10 @@
     <tr>
       <td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=97 height=10 alt="97.5%"><img src="snow.png" width=3 height=10 alt="97.5%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="97.6%"><img src="snow.png" width=2 height=10 alt="97.6%"></td></tr></table>
       </td>
-      <td class="coverPerHi">97.5&nbsp;%</td>
-      <td class="coverNumHi">1437 / 1474</td>
+      <td class="coverPerHi">97.6&nbsp;%</td>
+      <td class="coverNumHi">1439 / 1474</td>
       <td class="coverPerHi">96.0&nbsp;%</td>
       <td class="coverNumHi">387 / 403</td>
     </tr>
@@ -209,6 +189,16 @@
       <td class="coverPerHi">100.0&nbsp;%</td>
       <td class="coverNumHi">8 / 8</td>
     </tr>
+    <tr>
+      <td class="coverFile"><a href="models/ide_seir/index.html">models/ide_seir</a></td>
+      <td class="coverBar" align="center">
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=97 height=10 alt="96.8%"><img src="snow.png" width=3 height=10 alt="96.8%"></td></tr></table>
+      </td>
+      <td class="coverPerHi">96.8&nbsp;%</td>
+      <td class="coverNumHi">60 / 62</td>
+      <td class="coverPerHi">100.0&nbsp;%</td>
+      <td class="coverNumHi">10 / 10</td>
+    </tr>
     <tr>
       <td class="coverFile"><a href="models/ode_seir/index.html">models/ode_seir</a></td>
       <td class="coverBar" align="center">
@@ -219,6 +209,16 @@
       <td class="coverPerHi">100.0&nbsp;%</td>
       <td class="coverNumHi">12 / 12</td>
     </tr>
+    <tr>
+      <td class="coverFile"><a href="models/ide_secir/index.html">models/ide_secir</a></td>
+      <td class="coverBar" align="center">
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=91 height=10 alt="90.7%"><img src="snow.png" width=9 height=10 alt="90.7%"></td></tr></table>
+      </td>
+      <td class="coverPerHi">90.7&nbsp;%</td>
+      <td class="coverNumHi">273 / 301</td>
+      <td class="coverPerHi">100.0&nbsp;%</td>
+      <td class="coverNumHi">24 / 24</td>
+    </tr>
   </table>
   </center>
   <br>

diff --git a/coverage/cpp/index-sort-l.html b/coverage/cpp/index-sort-l.html
@@ -31,18 +31,18 @@
             <td class="headerValue">coverage.info</td>
             <td></td>
             <td class="headerItem">Lines:</td>
-            <td class="headerCovTableEntry">9026</td>
-            <td class="headerCovTableEntry">9443</td>
-            <td class="headerCovTableEntryHi">95.6 %</td>
+            <td class="headerCovTableEntry">9028</td>
+            <td class="headerCovTableEntry">9415</td>
+            <td class="headerCovTableEntryHi">95.9 %</td>
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-01-16 15:19:34</td>
+            <td class="headerValue">2024-01-18 16:35:19</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">6378</td>
-            <td class="headerCovTableEntry">7355</td>
-            <td class="headerCovTableEntryMed">86.7 %</td>
+            <td class="headerCovTableEntry">7352</td>
+            <td class="headerCovTableEntryMed">86.8 %</td>
           </tr>
           <tr><td><img src="glass.png" width=3 height=3 alt=""></td></tr>
         </table>
@@ -69,25 +69,15 @@
       <td class="tableHead" colspan=3>Line Coverage <span class="tableHeadSort"><img src="glass.png" width=10 height=14 alt="Sort by line coverage" title="Sort by line coverage" border=0></span></td>
       <td class="tableHead" colspan=2>Functions <span class="tableHeadSort"><a href="index-sort-f.html"><img src="updown.png" width=10 height=14 alt="Sort by function coverage" title="Sort by function coverage" border=0></a></span></td>
     </tr>
-    <tr>
-      <td class="coverFile"><a href="models/ide_seir/index.html">models/ide_seir</a></td>
-      <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="amber.png" width=82 height=10 alt="82.2%"><img src="snow.png" width=18 height=10 alt="82.2%"></td></tr></table>
-      </td>
-      <td class="coverPerMed">82.2&nbsp;%</td>
-      <td class="coverNumMed">60 / 73</td>
-      <td class="coverPerHi">90.9&nbsp;%</td>
-      <td class="coverNumHi">10 / 11</td>
-    </tr>
     <tr>
       <td class="coverFile"><a href="models/ide_secir/index.html">models/ide_secir</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="amber.png" width=86 height=10 alt="85.8%"><img src="snow.png" width=14 height=10 alt="85.8%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=91 height=10 alt="90.7%"><img src="snow.png" width=9 height=10 alt="90.7%"></td></tr></table>
       </td>
-      <td class="coverPerMed">85.8&nbsp;%</td>
-      <td class="coverNumMed">273 / 318</td>
-      <td class="coverPerHi">92.3&nbsp;%</td>
-      <td class="coverNumHi">24 / 26</td>
+      <td class="coverPerHi">90.7&nbsp;%</td>
+      <td class="coverNumHi">273 / 301</td>
+      <td class="coverPerHi">100.0&nbsp;%</td>
+      <td class="coverNumHi">24 / 24</td>
     </tr>
     <tr>
       <td class="coverFile"><a href="memilio/io/index.html">memilio/io</a></td>
@@ -129,6 +119,16 @@
       <td class="coverPerHi">99.5&nbsp;%</td>
       <td class="coverNumHi">217 / 218</td>
     </tr>
+    <tr>
+      <td class="coverFile"><a href="models/ide_seir/index.html">models/ide_seir</a></td>
+      <td class="coverBar" align="center">
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=97 height=10 alt="96.8%"><img src="snow.png" width=3 height=10 alt="96.8%"></td></tr></table>
+      </td>
+      <td class="coverPerHi">96.8&nbsp;%</td>
+      <td class="coverNumHi">60 / 62</td>
+      <td class="coverPerHi">100.0&nbsp;%</td>
+      <td class="coverNumHi">10 / 10</td>
+    </tr>
     <tr>
       <td class="coverFile"><a href="memilio/geography/index.html">memilio/geography</a></td>
       <td class="coverBar" align="center">
@@ -162,10 +162,10 @@
     <tr>
       <td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=97 height=10 alt="97.5%"><img src="snow.png" width=3 height=10 alt="97.5%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="97.6%"><img src="snow.png" width=2 height=10 alt="97.6%"></td></tr></table>
       </td>
-      <td class="coverPerHi">97.5&nbsp;%</td>
-      <td class="coverNumHi">1437 / 1474</td>
+      <td class="coverPerHi">97.6&nbsp;%</td>
+      <td class="coverNumHi">1439 / 1474</td>
       <td class="coverPerHi">96.0&nbsp;%</td>
       <td class="coverNumHi">387 / 403</td>
     </tr>

diff --git a/coverage/cpp/index.html b/coverage/cpp/index.html
@@ -31,18 +31,18 @@
             <td class="headerValue">coverage.info</td>
             <td></td>
             <td class="headerItem">Lines:</td>
-            <td class="headerCovTableEntry">9026</td>
-            <td class="headerCovTableEntry">9443</td>
-            <td class="headerCovTableEntryHi">95.6 %</td>
+            <td class="headerCovTableEntry">9028</td>
+            <td class="headerCovTableEntry">9415</td>
+            <td class="headerCovTableEntryHi">95.9 %</td>
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-01-16 15:19:34</td>
+            <td class="headerValue">2024-01-18 16:35:19</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">6378</td>
-            <td class="headerCovTableEntry">7355</td>
-            <td class="headerCovTableEntryMed">86.7 %</td>
+            <td class="headerCovTableEntry">7352</td>
+            <td class="headerCovTableEntryMed">86.8 %</td>
           </tr>
           <tr><td><img src="glass.png" width=3 height=3 alt=""></td></tr>
         </table>
@@ -152,32 +152,32 @@
     <tr>
       <td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=97 height=10 alt="97.5%"><img src="snow.png" width=3 height=10 alt="97.5%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=98 height=10 alt="97.6%"><img src="snow.png" width=2 height=10 alt="97.6%"></td></tr></table>
       </td>
-      <td class="coverPerHi">97.5&nbsp;%</td>
-      <td class="coverNumHi">1437 / 1474</td>
+      <td class="coverPerHi">97.6&nbsp;%</td>
+      <td class="coverNumHi">1439 / 1474</td>
       <td class="coverPerHi">96.0&nbsp;%</td>
       <td class="coverNumHi">387 / 403</td>
     </tr>
     <tr>
       <td class="coverFile"><a href="models/ide_secir/index.html">models/ide_secir</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="amber.png" width=86 height=10 alt="85.8%"><img src="snow.png" width=14 height=10 alt="85.8%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=91 height=10 alt="90.7%"><img src="snow.png" width=9 height=10 alt="90.7%"></td></tr></table>
       </td>
-      <td class="coverPerMed">85.8&nbsp;%</td>
-      <td class="coverNumMed">273 / 318</td>
-      <td class="coverPerHi">92.3&nbsp;%</td>
-      <td class="coverNumHi">24 / 26</td>
+      <td class="coverPerHi">90.7&nbsp;%</td>
+      <td class="coverNumHi">273 / 301</td>
+      <td class="coverPerHi">100.0&nbsp;%</td>
+      <td class="coverNumHi">24 / 24</td>
     </tr>
     <tr>
       <td class="coverFile"><a href="models/ide_seir/index.html">models/ide_seir</a></td>
       <td class="coverBar" align="center">
-        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="amber.png" width=82 height=10 alt="82.2%"><img src="snow.png" width=18 height=10 alt="82.2%"></td></tr></table>
+        <table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=97 height=10 alt="96.8%"><img src="snow.png" width=3 height=10 alt="96.8%"></td></tr></table>
       </td>
-      <td class="coverPerMed">82.2&nbsp;%</td>
-      <td class="coverNumMed">60 / 73</td>
-      <td class="coverPerHi">90.9&nbsp;%</td>
-      <td class="coverNumHi">10 / 11</td>
+      <td class="coverPerHi">96.8&nbsp;%</td>
+      <td class="coverNumHi">60 / 62</td>
+      <td class="coverPerHi">100.0&nbsp;%</td>
+      <td class="coverNumHi">10 / 10</td>
     </tr>
     <tr>
       <td class="coverFile"><a href="models/ode_secir/index.html">models/ode_secir</a></td>

diff --git a/coverage/cpp/memilio/compartments/compartmentalmodel.h.func-sort-c.html b/coverage/cpp/memilio/compartments/compartmentalmodel.h.func-sort-c.html
@@ -37,7 +37,7 @@
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-01-16 15:19:34</td>
+            <td class="headerValue">2024-01-18 16:35:19</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">31</td>
@@ -224,12 +224,12 @@
               <td class="coverFnHi">18107</td>
             </tr>
     <tr>
-              <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::oseir::InfectionState, mio::Populations&lt;mio::oseir::InfectionState&gt;, mio::oseir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">19413</td>
+              <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::osecir::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
+              <td class="coverFnHi">19428</td>
             </tr>
     <tr>
-              <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::osecir::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">20118</td>
+              <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::oseir::InfectionState, mio::Populations&lt;mio::oseir::InfectionState&gt;, mio::oseir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
+              <td class="coverFnHi">19437</td>
             </tr>
   </table>
   <br>

diff --git a/coverage/cpp/memilio/compartments/compartmentalmodel.h.func.html b/coverage/cpp/memilio/compartments/compartmentalmodel.h.func.html
@@ -37,7 +37,7 @@
           </tr>
           <tr>
             <td class="headerItem">Date:</td>
-            <td class="headerValue">2024-01-16 15:19:34</td>
+            <td class="headerValue">2024-01-18 16:35:19</td>
             <td></td>
             <td class="headerItem">Functions:</td>
             <td class="headerCovTableEntry">31</td>
@@ -197,7 +197,7 @@
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::oseir::InfectionState, mio::Populations&lt;mio::oseir::InfectionState&gt;, mio::oseir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">19413</td>
+              <td class="coverFnHi">19437</td>
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;mio::osecir::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
@@ -213,7 +213,7 @@
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::osecir::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
-              <td class="coverFnHi">20118</td>
+              <td class="coverFnHi">19428</td>
             </tr>
     <tr>
               <td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;mio::osecirvvs::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecirvvs::InfectionState&gt;, mio::osecirvvs::Parameters&gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>