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Separate unit/integration tests #1902

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merged 7 commits into from
Aug 7, 2024
Merged

Separate unit/integration tests #1902

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483d5c9
add empty SmiServices.IntegrationTests project
rkm Aug 7, 2024
39f55a3
initial separation of unit and integration tests
rkm Aug 7, 2024
8e21b3a
remove unimplemented test
rkm Aug 7, 2024
207fff9
add --unit-only option to test wrapper
rkm Aug 7, 2024
1c0df8d
don't need extra escape in script
rkm Aug 7, 2024
0439cc7
remove extra folder
rkm Aug 7, 2024
f75a6aa
add news file
rkm Aug 7, 2024
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6 changes: 6 additions & 0 deletions SmiServices.sln
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Expand Up @@ -30,6 +30,8 @@ Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "SmiServices", "src\SmiServi
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "SmiServices.UnitTests", "tests\SmiServices.UnitTests\SmiServices.UnitTests.csproj", "{080A433F-9AD6-40CD-BEB1-562ACB7A61EA}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "SmiServices.IntegrationTests", "tests\SmiServices.IntegrationTests\SmiServices.IntegrationTests.csproj", "{F9A6BC3B-A7D4-4FAF-B0C7-D270C545023B}"
EndProject
Global
GlobalSection(SolutionConfigurationPlatforms) = preSolution
Debug|Any CPU = Debug|Any CPU
Expand All @@ -44,6 +46,10 @@ Global
{080A433F-9AD6-40CD-BEB1-562ACB7A61EA}.Debug|Any CPU.Build.0 = Debug|Any CPU
{080A433F-9AD6-40CD-BEB1-562ACB7A61EA}.Release|Any CPU.ActiveCfg = Release|Any CPU
{080A433F-9AD6-40CD-BEB1-562ACB7A61EA}.Release|Any CPU.Build.0 = Release|Any CPU
{F9A6BC3B-A7D4-4FAF-B0C7-D270C545023B}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
{F9A6BC3B-A7D4-4FAF-B0C7-D270C545023B}.Debug|Any CPU.Build.0 = Debug|Any CPU
{F9A6BC3B-A7D4-4FAF-B0C7-D270C545023B}.Release|Any CPU.ActiveCfg = Release|Any CPU
{F9A6BC3B-A7D4-4FAF-B0C7-D270C545023B}.Release|Any CPU.Build.0 = Release|Any CPU
EndGlobalSection
GlobalSection(SolutionProperties) = preSolution
HideSolutionNode = FALSE
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12 changes: 10 additions & 2 deletions bin/smi/test.py
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Expand Up @@ -32,11 +32,17 @@ def main(argv: Optional[Sequence[str]] = None) -> int:
"--no-coverage",
action="store_true",
)
parser.add_argument(
group = parser.add_mutually_exclusive_group()
group.add_argument(
"--test",
nargs=1,
help="Run a specific test class",
)
group.add_argument(
"--unit-only",
action="store_true",
help="Run unit tests only"
)
args, _ = parser.parse_known_args(argv)

rc = downloadTessdata.main([])
Expand Down Expand Up @@ -73,14 +79,16 @@ def main(argv: Optional[Sequence[str]] = None) -> int:
cmd = ("dotnet", "tool", "restore")
C.run(cmd)

f = ("--filter", args.test[0]) if args.test else ""
f = ("--filter", args.test[0]) if args.test else ()
unit_only = ("--filter", "FullyQualifiedName!~SmiServices.IntegrationTests") if args.unit_only else ()
cmd = (
"dotnet", "dotnet-coverage", "collect",
"--settings", "coverage.settings",
"--",
"dotnet", "test",
"--configuration", args.configuration,
"--no-build" if args.no_build else "",
*unit_only,
*f,
)
C.run(cmd)
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1 change: 1 addition & 0 deletions news/1902-change.md
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@@ -0,0 +1 @@
Separate unit and integration tests into separate projects
1 change: 1 addition & 0 deletions ...lications/DicomLoader/DicomLoaderTests.cs → ...lications/DicomLoader/DicomLoaderTests.cs
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Expand Up @@ -14,6 +14,7 @@
using SmiServices.Common.Messages;
using SmiServices.Common.MongoDB;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.UnitTests.Common;
using SmiServices.UnitTests.Microservices.DicomRelationalMapper;
using SynthEHR;
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1 change: 1 addition & 0 deletions ...s/ExtractImages/ExtractImagesHostTests.cs → ...s/ExtractImages/ExtractImagesHostTests.cs
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Expand Up @@ -4,6 +4,7 @@
using SmiServices.Common.Messages;
using SmiServices.Common.Messages.Extraction;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.UnitTests.Common;
using System;
using System.Collections.Generic;
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1 change: 1 addition & 0 deletions ...gerUpdates/MapperSourceIntegrationTest.cs → ...gerUpdates/MapperSourceIntegrationTest.cs
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Expand Up @@ -8,6 +8,7 @@
using Rdmp.Core.ReusableLibraryCode.Checks;
using SmiServices.Applications.TriggerUpdates;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.IdentifierMapper.Swappers;
using SmiServices.Microservices.UpdateValues;
using SmiServices.UnitTests.Common;
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1 change: 1 addition & 0 deletions ...tions/TriggerUpdates/MapperSourceTests.cs → ...tions/TriggerUpdates/MapperSourceTests.cs
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Expand Up @@ -6,6 +6,7 @@
using Rdmp.Core.ReusableLibraryCode.Checks;
using SmiServices.Applications.TriggerUpdates;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.IdentifierMapper.Swappers;
using SmiServices.UnitTests.Common;
using System;
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1 change: 1 addition & 0 deletions ...itTests/Common/GlobalOptionsExtensions.cs → ...onTests/Common/GlobalOptionsExtensions.cs
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Expand Up @@ -2,6 +2,7 @@
using MongoDB.Driver;
using RabbitMQ.Client;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using System.Data.Common;

namespace SmiServices.UnitTests.Common
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1 change: 1 addition & 0 deletions ...nitTests/Common/HeaderPreservationTest.cs → ...ionTests/Common/HeaderPreservationTest.cs
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Expand Up @@ -3,6 +3,7 @@
using SmiServices.Common.Messages;
using SmiServices.Common.Messaging;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using System;

namespace SmiServices.UnitTests.Common
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1 change: 1 addition & 0 deletions ...s/Common/Messaging/RabbitMQBrokerTests.cs → ...s/Common/Messaging/RabbitMQBrokerTests.cs
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Expand Up @@ -7,6 +7,7 @@
using SmiServices.Common.Messages;
using SmiServices.Common.Messaging;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using System;
using System.Collections.Generic;
using System.Linq;
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1 change: 1 addition & 0 deletions ...s/Common/MongoDB/MongoQueryParserTests.cs → ...s/Common/MongoDB/MongoQueryParserTests.cs
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Expand Up @@ -5,6 +5,7 @@
using NUnit.Framework;
using SmiServices.Common.MongoDB;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using System.Threading.Tasks;

namespace SmiServices.UnitTests.Common.MongoDB
Expand Down
0 ...Services.UnitTests/Common/OptionsTests.cs → ...s.IntegrationTests/Common/OptionsTests.cs
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1 change: 1 addition & 0 deletions ...CohortExtractor/BlacklistRejectorTests.cs → ...CohortExtractor/BlacklistRejectorTests.cs
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@@ -1,5 +1,6 @@
using FAnsi;
using NUnit.Framework;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.CohortExtractor.RequestFulfillers;
using SmiServices.UnitTests.Common;
using System.Data;
Expand Down
1 change: 1 addition & 0 deletions ...xtractor/ColumnInfoValuesRejectorTests.cs → ...xtractor/ColumnInfoValuesRejectorTests.cs
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Expand Up @@ -4,6 +4,7 @@
using NUnit.Framework;
using Rdmp.Core.Curation;
using Rdmp.Core.Curation.Data;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.CohortExtractor.RequestFulfillers;
using SmiServices.UnitTests.Common;
using System.Collections.Generic;
Expand Down
18 changes: 1 addition & 17 deletions ...ortExtractor/ExtractionSuperTableTests.cs → ...ortExtractor/ExtractionSuperTableTests.cs
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Expand Up @@ -5,6 +5,7 @@
using Rdmp.Core.DataLoad.Triggers;
using SmiServices.Common.Messages.Extraction;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.CohortExtractor;
using SmiServices.Microservices.CohortExtractor.Audit;
using SmiServices.Microservices.CohortExtractor.RequestFulfillers;
Expand Down Expand Up @@ -262,21 +263,4 @@ private string GetUpdateTopXSql(DiscoveredTable tbl, int topXRows, string setSql

}
}

internal class TestRejector : IRejector
{
public bool Reject(IDataRecord row, [NotNullWhen(true)] out string? reason)
{
//if the image is not extractable
if (!Convert.ToBoolean(row["IsExtractableToDisk"]))
{
//tell them why and reject it
reason = (row["IsExtractableToDisk_Reason"] as string)!;
return true;
}

reason = null;
return false;
}
}
}
1 change: 1 addition & 0 deletions ...aloguesExtractionRequestFulfillerTests.cs → ...aloguesExtractionRequestFulfillerTests.cs
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Expand Up @@ -5,6 +5,7 @@
using NUnit.Framework;
using Rdmp.Core.Curation.Data;
using SmiServices.Common.Messages.Extraction;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.CohortExtractor;
using SmiServices.Microservices.CohortExtractor.Audit;
using SmiServices.Microservices.CohortExtractor.RequestFulfillers;
Expand Down
1 change: 1 addition & 0 deletions ...kager/Execution/CohortPackagerHostTest.cs → .../CohortPackager/CohortPackagerHostTest.cs
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Expand Up @@ -8,6 +8,7 @@
using SmiServices.Common.MessageSerialization;
using SmiServices.Common.MongoDB;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.CohortPackager;
using SmiServices.Microservices.CohortPackager.ExtractJobStorage;
using SmiServices.UnitTests.Common;
Expand Down
1 change: 1 addition & 0 deletions ...roservices/CohortPackager/ProgramTests.cs → ...roservices/CohortPackager/ProgramTests.cs
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Expand Up @@ -4,6 +4,7 @@
using SmiServices.Common.Messages.Extraction;
using SmiServices.Common.MessageSerialization;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.CohortPackager;
using SmiServices.UnitTests.Common;
using System;
Expand Down
1 change: 1 addition & 0 deletions ...comAnonymiser/DicomAnonymiserHostTests.cs → ...comAnonymiser/DicomAnonymiserHostTests.cs
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Expand Up @@ -4,6 +4,7 @@
using SmiServices.Common.Messages;
using SmiServices.Common.Messages.Extraction;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.DicomAnonymiser;
using SmiServices.Microservices.DicomAnonymiser.Anonymisers;
using SmiServices.UnitTests.Common;
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1 change: 1 addition & 0 deletions .../DLEBenchmarkingTests/HowFastIsDLETest.cs → .../DLEBenchmarkingTests/HowFastIsDLETest.cs
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Expand Up @@ -21,6 +21,7 @@
using Rdmp.Dicom.PipelineComponents.DicomSources.Worklists;
using SmiServices.Common.Messages;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.DicomRelationalMapper;
using SmiServices.Microservices.DicomRelationalMapper.Namers;
using SmiServices.UnitTests.Common;
Expand Down
24 changes: 1 addition & 23 deletions ...lMapper/DicomRelationalMapperHostTests.cs → ...lMapper/DicomRelationalMapperHostTests.cs
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@@ -1,9 +1,9 @@
using FAnsi;
using NUnit.Framework;
using Rdmp.Core.Curation.Data;
using Rdmp.Core.Curation.Data.DataLoad;
using Rdmp.Core.MapsDirectlyToDatabaseTable;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.DicomRelationalMapper;
using SmiServices.Microservices.DicomRelationalMapper.Namers;
using SmiServices.UnitTests.Common;
Expand Down Expand Up @@ -66,26 +66,4 @@ public void TestCreatingNamer_CorrectType(DatabaseType dbType, string typeName,
}
}
}

public class GuidDatabaseNamerTest
{
[Test]
public void GetExampleName()
{
//t6ff062af5538473f801ced2b751c7897test_RAW
//t6ff062af5538473f801ced2b751c7897DLE_STAGING
var namer = new GuidDatabaseNamer("test", new Guid("6ff062af-5538-473f-801c-ed2b751c7897"));

var raw = namer.GetDatabaseName("test", LoadBubble.Raw);
Console.WriteLine(raw);

Assert.That(raw, Does.Contain("6ff"));

var staging = namer.GetDatabaseName("test", LoadBubble.Staging);
Console.WriteLine(staging);

Assert.That(staging, Does.Contain("6ff"));
}

}
}
1 change: 1 addition & 0 deletions ...ionalMapper/DicomRelationalMapperTests.cs → ...ionalMapper/DicomRelationalMapperTests.cs
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Expand Up @@ -8,6 +8,7 @@
using Rdmp.Dicom.PipelineComponents.DicomSources;
using Rdmp.Dicom.TagPromotionSchema;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.DicomRelationalMapper;
using SmiServices.UnitTests.Common;
using System;
Expand Down
1 change: 1 addition & 0 deletions ...nalMapper/MicroservicesIntegrationTest.cs → ...nalMapper/MicroservicesIntegrationTest.cs
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Expand Up @@ -20,6 +20,7 @@
using SmiServices.Common.Messages.Extraction;
using SmiServices.Common.Messaging;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.CohortExtractor;
using SmiServices.Microservices.CohortExtractor.RequestFulfillers;
using SmiServices.Microservices.DicomRelationalMapper;
Expand Down
1 change: 1 addition & 0 deletions ...RunMeFirstTests/RunMeFirstMongoServers.cs → ...RunMeFirstTests/RunMeFirstMongoServers.cs
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@@ -1,6 +1,7 @@
using NUnit.Framework;
using SmiServices.Common.Messaging;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.UnitTests.Common;
using System;

Expand Down
1 change: 1 addition & 0 deletions ...er/RunMeFirstTests/RunMeFirstRdmpTests.cs → ...er/RunMeFirstTests/RunMeFirstRdmpTests.cs
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@@ -1,6 +1,7 @@
using FAnsi;
using NUnit.Framework;
using Rdmp.Core.MapsDirectlyToDatabaseTable;
using SmiServices.IntegrationTests;
using SmiServices.UnitTests.Common;
using System.IO;
using Tests.Common;
Expand Down
1 change: 1 addition & 0 deletions ...ader/Execution/DicomTagReaderHostTests.cs → ...DicomTagReader/DicomTagReaderHostTests.cs
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@@ -1,6 +1,7 @@
using BadMedicine.Dicom;
using NUnit.Framework;
using SmiServices.Common.Messages;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.DicomTagReader.Execution;
using SmiServices.UnitTests.Common;
using System;
Expand Down
1 change: 1 addition & 0 deletions .../Messaging/DicomTagReaderConsumerTests.cs → .../Messaging/DicomTagReaderConsumerTests.cs
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Expand Up @@ -4,6 +4,7 @@
using RabbitMQ.Client;
using SmiServices.Common.Messages;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.DicomTagReader.Execution;
using SmiServices.Microservices.DicomTagReader.Messaging;
using SmiServices.UnitTests.Common;
Expand Down
1 change: 1 addition & 0 deletions ...icomTagReader/Execution/TagReaderTests.cs → ...services/DicomTagReader/TagReaderTests.cs
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Expand Up @@ -2,6 +2,7 @@
using Moq;
using NUnit.Framework;
using SmiServices.Common.Messages;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.DicomTagReader.Execution;
using SmiServices.UnitTests.Common;
using System;
Expand Down
1 change: 1 addition & 0 deletions ...services/FileCopier/FileCopierHostTest.cs → ...services/FileCopier/FileCopierHostTest.cs
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Expand Up @@ -4,6 +4,7 @@
using RabbitMQ.Client.Events;
using SmiServices.Common.Messages.Extraction;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.FileCopier;
using SmiServices.UnitTests.Common;
using System;
Expand Down
1 change: 1 addition & 0 deletions ...IdentifierMapper/IdentifierMapperTests.cs → ...IdentifierMapper/IdentifierMapperTests.cs
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Expand Up @@ -8,6 +8,7 @@
using SmiServices.Common.Messages;
using SmiServices.Common.Messaging;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.IdentifierMapper;
using SmiServices.Microservices.IdentifierMapper.Swappers;
using SmiServices.UnitTests.Common;
Expand Down
1 change: 1 addition & 0 deletions ...ces/IdentifierMapper/RedisSwapperTests.cs → ...ces/IdentifierMapper/RedisSwapperTests.cs
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Expand Up @@ -2,6 +2,7 @@
using FAnsi.Discovery;
using NUnit.Framework;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.IdentifierMapper.Swappers;
using SmiServices.UnitTests.Common;
using StackExchange.Redis;
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1 change: 1 addition & 0 deletions ...ableLookupWithGuidFallbackSwapperTests.cs → ...ableLookupWithGuidFallbackSwapperTests.cs
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Expand Up @@ -2,6 +2,7 @@
using FAnsi.Discovery;
using NUnit.Framework;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.IdentifierMapper.Swappers;
using SmiServices.UnitTests.Common;
using System.Collections.Generic;
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1 change: 1 addition & 0 deletions ...IsIdentifiable/IsIdentifiableHostTests.cs → ...IsIdentifiable/IsIdentifiableHostTests.cs
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@@ -1,6 +1,7 @@
using NUnit.Framework;
using SmiServices.Common.Messages.Extraction;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.IsIdentifiable;
using SmiServices.UnitTests.Common;
using System;
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1 change: 1 addition & 0 deletions ...g/MongoDbPopulatorMessageConsumerTests.cs → ...g/MongoDbPopulatorMessageConsumerTests.cs
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Expand Up @@ -4,6 +4,7 @@
using RabbitMQ.Client;
using RabbitMQ.Client.Events;
using SmiServices.Common.Messages;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.MongoDBPopulator;
using SmiServices.UnitTests.Common;
using System.Text;
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1 change: 1 addition & 0 deletions ...opulator/Execution/MongoDbAdapterTests.cs → ...s/MongoDBPopulator/MongoDbAdapterTests.cs
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@@ -1,6 +1,7 @@
using MongoDB.Bson;
using MongoDB.Driver;
using NUnit.Framework;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.MongoDBPopulator;
using SmiServices.UnitTests.Common;
using System.Collections.Generic;
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1 change: 1 addition & 0 deletions ...or/Execution/MongoDbPopulatorHostTests.cs → ...oDBPopulator/MongoDbPopulatorHostTests.cs
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Expand Up @@ -5,6 +5,7 @@
using NUnit.Framework;
using SmiServices.Common.Messages;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.MongoDBPopulator;
using SmiServices.UnitTests.Common;
using System;
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1 change: 1 addition & 0 deletions .../Processing/ImageMessageProcessorTests.cs → .../Processing/ImageMessageProcessorTests.cs
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Expand Up @@ -8,6 +8,7 @@
using RabbitMQ.Client;
using SmiServices.Common.Messages;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.MongoDBPopulator;
using SmiServices.Microservices.MongoDBPopulator.Processing;
using SmiServices.UnitTests.Common;
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1 change: 1 addition & 0 deletions ...ution/Processing/MessageProcessorTests.cs → ...lator/Processing/MessageProcessorTests.cs
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Expand Up @@ -3,6 +3,7 @@
using NUnit.Framework;
using SmiServices.Common.Messages;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.MongoDBPopulator;
using SmiServices.Microservices.MongoDBPopulator.Processing;
using SmiServices.UnitTests.Common;
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1 change: 1 addition & 0 deletions ...Processing/SeriesMessageProcessorTests.cs → ...Processing/SeriesMessageProcessorTests.cs
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Expand Up @@ -8,6 +8,7 @@
using RabbitMQ.Client;
using SmiServices.Common.Messages;
using SmiServices.Common.Options;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.MongoDBPopulator;
using SmiServices.Microservices.MongoDBPopulator.Processing;
using SmiServices.UnitTests.Common;
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1 change: 1 addition & 0 deletions ...rvices/UpdateValues/TestUpdateDatabase.cs → ...rvices/UpdateValues/TestUpdateDatabase.cs
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Expand Up @@ -2,6 +2,7 @@
using FAnsi.Discovery;
using NUnit.Framework;
using SmiServices.Common.Messages.Updating;
using SmiServices.IntegrationTests;
using SmiServices.Microservices.UpdateValues;
using SmiServices.UnitTests.Common;
using System;
Expand Down
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