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@SATVILab

SATVI, University of Cape Town

Research Centre at the University of Cape Town
README.md

The South African Tuberculosis Vaccine Initiative is a clinical research centre, located within the Health Sciences Faculty at the University of Cape Town. SATVI's mission is the development of new and effective vaccination strategies against TB and has a strong TB clinical immunology laboratory. We provide data and code via GitHub to reproduce our analyses, as well as packages implementing our own algorithms and small packages extending others.

We use a consistent naming system, with the following prefixes indicating the purpose of the repository:

  • DataTidy: processes data
  • Analysis: analyses data
  • Report: details and summarises analyses
  • Pipeline: project-specific functions
  • Utils: extend existing packages with utility functions
  • Minor: very small self-contained analyses

For a directory of publicly-available projects and packages, see here for projects and here for packages.

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  1. ReportGelaDURT ReportGelaDURT Public

    Gela (2022) analyses and figures

    R

  2. DataTidyGelaDURT DataTidyGelaDURT Public

    Gela (2022) datasets

    R

  3. UtilsCompassSV UtilsCompassSV Public

    Utility functions to plot and work with COMPASS output

    R

  4. UtilsDataRSV UtilsDataRSV Public

    Facilitate data pre-processing

    R 1

  5. UtilsGGSV UtilsGGSV Public

    Utility functions for ggplot2

    R

  6. UtilsCytoRSV UtilsCytoRSV Public

    R

Repositories

Showing 10 of 48 repositories
  • SATVI_ComputationalCourse Public

    This repository contains all materials needed for the SATVI Computational Course. These resources are version-controlled, living documents that will be updated as needed as the course progresses.

    SATVILab/SATVI_ComputationalCourse’s past year of commit activity
    HTML 0 0 6 0 Updated Apr 9, 2025
  • projr Public

    Streamline R projects

    SATVILab/projr’s past year of commit activity
    R 1 1 109 0 Updated Apr 9, 2025
  • M72_CITEseqHIVE_scRNAseq_Pipeline Public
    SATVILab/M72_CITEseqHIVE_scRNAseq_Pipeline’s past year of commit activity
    R 0 0 0 0 Updated Mar 18, 2025
  • Comp_M72_CITEseqHIVE_scRNAseq Public
    SATVILab/Comp_M72_CITEseqHIVE_scRNAseq’s past year of commit activity
    0 0 0 0 Updated Mar 18, 2025
  • dotfiles Public

    Config and commands for HPC and GitHub codespaces

    SATVILab/dotfiles’s past year of commit activity
    Shell 0 MIT 2 0 0 Updated Mar 18, 2025
  • Comp25PostMortemCyTOF Public
    SATVILab/Comp25PostMortemCyTOF’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 17, 2025
  • stimgate Public

    Robustly identify rare responses to stimulation

    SATVILab/stimgate’s past year of commit activity
    R 0 0 9 0 Updated Mar 14, 2025
  • UtilsFaustSV Public
    SATVILab/UtilsFaustSV’s past year of commit activity
    R 0 0 2 0 Updated Mar 14, 2025
  • Comp25DLCICEPipeline Public
    SATVILab/Comp25DLCICEPipeline’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 6, 2025
  • CompTemplate Public template Forked from MiguelRodo/CompTemplate
    SATVILab/CompTemplate’s past year of commit activity
    Dockerfile 0 1 0 0 Updated Feb 17, 2025
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