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Update README.md
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Rowena-h committed Nov 24, 2021
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Expand Up @@ -18,7 +18,7 @@ It requires the [**taxize**](https://github.com/ropensci/taxize) R package to ru

The only input needed is a file containing a list of names **without a header**. To see an example, refer to [example/list](example/list).

To run the script:
To run the script in the command line:

```
Rscript FungusNameCheck.R example/list
Expand All @@ -31,3 +31,5 @@ To run the script and additionally produce a log file:
```
Rscript FungusNameCheck.R example/list 2>&1 | tee log
```

If there is an `NA` in the current name column it means that the provided name can't be found anywhere in Species Fungorum, but as the script can't cope with typoes, it's probably worth double-checking for that before anything else.

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