BS-Snper results

[yaaminiv]

@sr320 Here's an IGV file with unique C/T SNPs and BAM files for all samples: https://github.com/RobertsLab/project-gigas-oa-meth/blob/master/output/07-BS-Snper/BS-Snper.xml

Confused on what I should be looking for specifically...

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Note: I have VCF files from BS-Snper, but IGV keeps crashing when I try loading them. A list of VCF files below in case you're interested in trying:

• merged SNPs: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/SNP-results.vcf
• sample 1: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf
• sample 2: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf
• sample 3: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf
• sample 4: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf
• sample 5: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf
• sample 6: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_6_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf
• sample 7: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf
• sample 8: https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/zr3616_8_R1_val_1_val_1_val_1_bismark_bt2_pe.SNP-results.vcf