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BS-Snper.xml
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<Session genome="https://gannet.fish.washington.edu/spartina/project-oyster-oa/data/Cg-roslin/cgigas_uk_roslin_v1_genomic-mito.fa" locus="All" version="8">
<Resources>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/BS-Snper/unique-CT-SNPs.bed" type="bed"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_6_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
<Resource path="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_8_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" type="bam"/>
</Resources>
<Panel height="101" name="Panel1644267652794" width="1133">
<Track attributeKey="zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_coverage" name="zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" snpThreshold="0.2" visible="true">
<DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="60.0" minimum="0.0" type="LINEAR"/>
</Track>
<Track attributeKey="zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" clazz="org.broad.igv.sam.SpliceJunctionTrack" fontSize="10" groupByStrand="false" height="60" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_junctions" name="zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" visible="false"/>
<Track attributeKey="zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" clazz="org.broad.igv.sam.AlignmentTrack" color="185,185,185" displayMode="EXPANDED" experimentType="OTHER" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" name="zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" visible="true">
<RenderOptions/>
</Track>
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<Panel height="101" name="Panel1644267667144" width="1133">
<Track attributeKey="zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_coverage" name="zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" snpThreshold="0.2" visible="true">
<DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="60.0" minimum="0.0" type="LINEAR"/>
</Track>
<Track attributeKey="zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" clazz="org.broad.igv.sam.SpliceJunctionTrack" fontSize="10" groupByStrand="false" height="60" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_junctions" name="zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" visible="false"/>
<Track attributeKey="zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" clazz="org.broad.igv.sam.AlignmentTrack" color="185,185,185" displayMode="EXPANDED" experimentType="OTHER" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" name="zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" visible="true">
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<Panel height="101" name="Panel1644267675381" width="1133">
<Track attributeKey="zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_coverage" name="zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" snpThreshold="0.2" visible="true">
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</Track>
<Track attributeKey="zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" clazz="org.broad.igv.sam.SpliceJunctionTrack" fontSize="10" groupByStrand="false" height="60" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_junctions" name="zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" visible="false"/>
<Track attributeKey="zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" clazz="org.broad.igv.sam.AlignmentTrack" color="185,185,185" displayMode="EXPANDED" experimentType="OTHER" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" name="zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" visible="true">
<RenderOptions/>
</Track>
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<Panel height="101" name="Panel1644267691256" width="1133">
<Track attributeKey="zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_coverage" name="zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" snpThreshold="0.2" visible="true">
<DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="60.0" minimum="0.0" type="LINEAR"/>
</Track>
<Track attributeKey="zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" clazz="org.broad.igv.sam.SpliceJunctionTrack" fontSize="10" groupByStrand="false" height="60" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_junctions" name="zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" visible="false"/>
<Track attributeKey="zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" clazz="org.broad.igv.sam.AlignmentTrack" color="185,185,185" displayMode="EXPANDED" experimentType="OTHER" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" name="zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" visible="true">
<RenderOptions/>
</Track>
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<Panel height="101" name="Panel1644267698895" width="1133">
<Track attributeKey="zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_coverage" name="zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" snpThreshold="0.2" visible="true">
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</Track>
<Track attributeKey="zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" clazz="org.broad.igv.sam.SpliceJunctionTrack" fontSize="10" groupByStrand="false" height="60" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_junctions" name="zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" visible="false"/>
<Track attributeKey="zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" clazz="org.broad.igv.sam.AlignmentTrack" color="185,185,185" displayMode="EXPANDED" experimentType="OTHER" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" name="zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam" visible="true">
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<Track attributeKey="zr3616_6_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_6_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_coverage" name="zr3616_6_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" snpThreshold="0.2" visible="true">
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<Track attributeKey="zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" fontSize="10" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_coverage" name="zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Coverage" snpThreshold="0.2" visible="true">
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</Track>
<Track attributeKey="zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" clazz="org.broad.igv.sam.SpliceJunctionTrack" fontSize="10" groupByStrand="false" height="60" id="https://gannet.fish.washington.edu/spartina/project-gigas-oa-meth/output/bismark-roslin/zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam_junctions" name="zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.sorted.bam Junctions" visible="false"/>
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