Small bbmap container
# Run tools with proper bash support
docker run --platform linux/amd64 -v "$(pwd):/data" picotainers/bbmap:latest bbduk.sh in=input.fastq out=filtered.fastq
docker run --platform linux/amd64 -v "$(pwd):/data" picotainers/bbmap:latest bbmap.sh in=reads.fq ref=reference.fa out=mapped.sam