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v0.2.0
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@skchronicles skchronicles released this 06 Jun 15:17
· 4 commits to main since this release
v0.2.0
afa702c

mpox-seek

New feature: plot coverage along the genome.

Added a new option called, --plot-coverage, to create per-sample coverage plots along the amplified region of the genome.

  • Updated the docker image and conda environment for new required dependencies: deeptools, samtools, and pygenometracks.
    • To use this verion of the pipeline, please re-build or create a new conda environment using the following conda environment file.
  • Added new rules to convert BAM to BigWig using deeptools bamCoverage and visualizing the coverage with pygenometracks (from the authors of DeepTools).

Full Changelog: v0.1.0...v0.2.0

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