Code

Seperate ends#57

Code

Merged

skchronicles merged 27 commits intomainOpenOmics/chrom-seek:mainfrom seperate_endsOpenOmics/chrom-seek:seperate_endsCopy head branch name to clipboardJan 13, 2025

+2,489-1,920

Commits

Commits on Dec 10, 2024

• feat: vscode ignore stashes

  rroutsong

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  010d9d1

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• fix: seperate paired and single end rules, conditional import

  rroutsong

  committed
  ef9f39c

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• Merge branch 'seperate_ends' of http://github.com/OpenOmics/chrom-seek into seperate_ends

  rroutsong

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  01bd7d5

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• fix: add back trim-align-dedup ended rules

  rroutsong

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  11bd817

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• fix: changeset from testing with blocked toy dataset

  rroutsong

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  c3a12ca

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• fix: testing fixes with the 3 toy datasets

  rroutsong

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  9735b6e

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• fix: add missing import to single end qc rules

  rroutsong

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  05d7fa0

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Commits on Dec 11, 2024

• fix: correct ci dry run failures

  rroutsong

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  e3da83c

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• fix: remove file_stems

  rroutsong

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  8ea4e6c

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• fix: add conditional when no inputs

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  ef4a33c

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• fix: null output on just paired end

  rroutsong

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  83bb23c

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• fix: prettify rule put option arg at end with no line break

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  b515b64

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Commits on Dec 23, 2024

• fix: lint

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  5d9cd55

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• fix: lint

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  63489b2

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Commits on Dec 27, 2024

• fix: correctly route insert size metric files at rule all level

  rroutsong

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  27709bd

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• fix: reroute insert size metrics and RPGC bigwigs

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  4b32239

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Commits on Dec 30, 2024

• fix: review suggestions

  rroutsong

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  c8e2b06

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• fix: update bam2bw paired end execution

  rroutsong

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  f3bf548

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Commits on Jan 2, 2025

• fix: ppqt routing and acceptance of tagalign

  rroutsong

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  5d05803

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Commits on Jan 3, 2025

• fix: correct some parameters of ppqt tagalign and ppqt

  rroutsong

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  ddbafc9

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Commits on Jan 6, 2025

• fix: move to 44371755 and lint

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  e990890

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• fix: move to 44371755 and lint

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  a3bc8e0

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• fix: continued move to and linting

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  c1b9441

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• fix: correct ppqt_tagalign functionality

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  3f8826e

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Commits on Jan 10, 2025

• fix: review changes

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  de2fc0b

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• fix: revert ppqt wildcard removal

  rroutsong

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  3e19dbd

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• feat: add ppqt fragment length file

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  33040a2

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