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fix: handle tmpdir to frip rules, enforce tmpdir for pybedtools, mult… #51

Merged
merged 3 commits into from
Nov 4, 2024
Merged

fix: handle tmpdir to frip rules, enforce tmpdir for pybedtools, mult… #51

merged 3 commits into from
Nov 4, 2024

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rroutsong
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  • export $TMPDIR at frip rules
  • force pybedtools in frip.py to use $TMPDIR
  • multithread the pysam calls in frip.py
    • rule changes to pass threads
  • use black to to format frip.py

skchronicles
skchronicles reviewed Nov 4, 2024
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@skchronicles skchronicles merged commit be2a788 into main Nov 4, 2024
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@skchronicles skchronicles skchronicles approved these changes

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@rroutsong @skchronicles