adding chip motif analysis tool, MEME rule #26
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| bedtools getfasta -fi {params.ref_fa} -bed {input.bed} -fo ${{tmp}}/{params.outfa} | ||
| meme-chip \\ | ||
| --oc {params.oc}_meme \\ | ||
| -db {params.meme_vertebrates_db} \\ |
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@asyakhl Will this work if a user selects rheMac10 as the genome? For this reference genome, it is set to an empty string. I am not sure if that will cause an error when it runs:
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If it does cause a problem, can we add a lambda statement to build the -db DB string within the params section of the snakemake rule?
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Hey @asyakhl, Everything looks great! Can you please let me know what you think about the thread above? I am not sure if we should make the |
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Everything looks perfect! Please ignore my initial comment about the db for rheMac10. |
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