Merge pull request #30 from tovahmarkowitz/main

Update Snakefile
OpenOmics · Feb 27, 2024 · ddcfdd9 · ddcfdd9
2 parents cda0166 + 846857a
commit ddcfdd9
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -215,8 +215,6 @@ if assay == "cfchip":
                 PeakTool=['DiffbindEdgeR','DiffbindDeseq2'],name=contrasts,type=["protTSS"]), reps == "yes"),
             provided(expand(join(workpath,uropa_dir,"promoterTable2",'DiffbindDeseq2_{PeakTool}_promoter_overlap_summaryTable.txt'), 
                 PeakTool=PeakTools),reps == "yes" and contrast),
-            expand(join(workpath, "MEME", "{PeakTool}", "{name}_meme", "meme-chip.html"), PeakTool=PeakTools, name=chips),
-            expand(join(workpath, "MEME", "{PeakTool}", "{name}_ame", "ame.html"), PeakTool=PeakTools, name=chips)
 
 elif assay in ["atac", "chip"]:
     rule all: